Locus 1599

Sequence ID 2R_DroMel_CAF1
Location 5,992,092 – 5,992,189
Length 97
Max. P 0.758954
window2682

overview

Window 2

Location 5,992,092 – 5,992,189
Length 97
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -29.65
Consensus MFE -21.95
Energy contribution -22.63
Covariance contribution 0.67
Combinations/Pair 1.36
Mean z-score -1.60
Structure conservation index 0.74
SVM decision value 0.50
SVM RNA-class probability 0.758954
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5992092 97 + 20766785
UUAAGAAAGUGGAU------UAAAUGU-ACUUACUACCGUUUAUCCACAGGGACAAGGCUAUAACCCGUAUGCCCAGCCCGGUGGUGGCUAUGCCCCGCCGCCA
........((((((------.(((((.-.........))))))))))).(((.(..((((((.....))).)))..))))((((((((.......)))))))). ( -33.40)
>DroSec_CAF1 10491 97 + 1
UUAAGAAAGUGGAU------UAAAUGU-AAUCACUUUCGUUUAUCCACAGGGACAAGGCUAUAACCCGUAUGCCCAGCCCGGUGGUGGCUAUGCCCCGCCGCCC
........((((((------.(((((.-.........))))))))))).(((.(..((((((.....))).)))..))))((((((((.......)))))))). ( -33.00)
>DroSim_CAF1 10929 97 + 1
UUAAGAAAGUGGAU------UAAAUGU-AAUCACUAUCGUUUAUCCACAGGGACAAGGCUAUAACCCGUAUGCCCAGCCCGGUGGUGGCUAUGCUCCGCCGCCC
........((((((------.(((((.-.........))))))))))).(((.(..((((((.....))).)))..))))((((((((.......)))))))). ( -32.80)
>DroEre_CAF1 10591 97 + 1
UUAGGAAAGUGAAU------UAGGUGCCAAAUGCUGU-GUUUAUCCACAGGGACAAGGCUAUAACCCGUAUGCCCAGCCCGGUGGUGGCUAUGCCCCGCCGCCC
........(((...------((((..(........).-.))))..))).(((.(..((((((.....))).)))..))))((((((((.......)))))))). ( -27.90)
>DroYak_CAF1 10630 94 + 1
UCAAGAAAGUGGAU------UAAGUGU-AAAUGCUGUCGCUCAUCCACAGGGACAAGGCUAUAAUCCAUAUGCCCAGCCCGG---UGGCUAUGCCCCGCCGCCC
........((((((------..((((.-.........)))).)))))).(((.(..((((((.....))).)))..))))((---((((........)))))). ( -29.80)
>DroAna_CAF1 11039 99 + 1
AUAAAAAACUGAUUCCUUCAUGAAUAU-AA----CAUAUUUCUCCUUCAGGGACAAGGUUAUAAUCCGUAUGCUCAACCCGGCGGAGGCUAUGCCGCUCCGCCC
.........(((.....))).((.(((-((----(.....((((.....))))....)))))).))..............(((((((.(......)))))))). ( -21.00)
>consensus
UUAAGAAAGUGGAU______UAAAUGU_AAUUACUAUCGUUUAUCCACAGGGACAAGGCUAUAACCCGUAUGCCCAGCCCGGUGGUGGCUAUGCCCCGCCGCCC
........((((((.......(((((...........))))))))))).(((....((((((.....))).)))...)))((((((((.......)))))))). (-21.95 = -22.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:33 2006