Locus 1597

Sequence ID 2R_DroMel_CAF1
Location 5,983,804 – 5,983,915
Length 111
Max. P 0.730830
window2679

overview

Window 9

Location 5,983,804 – 5,983,915
Length 111
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.95
Mean single sequence MFE -34.70
Consensus MFE -19.52
Energy contribution -18.50
Covariance contribution -1.02
Combinations/Pair 1.28
Mean z-score -1.92
Structure conservation index 0.56
SVM decision value 0.42
SVM RNA-class probability 0.730830
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5983804 111 - 20766785
UCACAUUGUGGUUCUCCACAAGGGCUGCUACUACAAGAUGCUCAUCUACUACAAGGGUCGCAUCCUGCGCCCAUGCGAAUUGCAAGUGUAAGCGA-C------UUG-UGGCCAAAAACU
.....((((((....)))))).((((......(((((.((((....((((....(((.(((.....)))))).(((.....)))))))..)))).-)------)))-)))))....... ( -33.80)
>DroVir_CAF1 2310 113 - 1
UCACAUUGUGGUGCUGCACAAGGGCUGCUACUACAAGAUGCUAAUCUACUAUAAGGGACGCACUCUGCGCCCCUGCGAGCUGCAAGUGUAAGUAAACAAAUCCUUGCUUACC------A
.....(((((((((.((......)).)).)))))))..(((...((.......((((.(((.....))).))))..))...))).(.((((((((........)))))))))------. ( -32.40)
>DroEre_CAF1 2628 108 - 1
UCACAUUGUGGUGCUCCACAAGGGCUGCUACUACAAGAUGCUCAUCUACUACAAGGGUCGCAUCCUGCGUCCGUGCGAAUUGCAGGUGUAAGUGA-C------UUG-UGGAGUGC---C
.........((..(((((((((.(((((..((.(((..(((.(..((......))((.(((.....))).))).)))..))).))..)).)))..-)------)))-)))))..)---) ( -38.90)
>DroYak_CAF1 2459 111 - 1
CCACAUUGUGGUUCUGCACAAGGGCUGCUACUACAAGAUGCUCAUCUACUACAAGGGUCGCAUCCUGCGUCCUUGCGAGUUGCAGGUGUAAGUAA-C------UUG-UGGAAUACAAAU
.......(..(((((.....)))))..)..(((((((.((((((((((((.((((((.(((.....)))))))))..)))...)))))..)))).-)------)))-)))......... ( -36.60)
>DroMoj_CAF1 2420 104 - 1
UCACAUUGUGGUGCUGCACAAGGGCUGCUACUACAAGAUGCUCAUCUACUACAAGGGACGCACUCUGCGCCCCUGUGAGCUGCAGCUGUAAGU---------CUAGCUGACC------U
.....(((((((((.((......)).)).)))))))...((((((........((((.(((.....))).))))))))))..((((((.....---------.))))))...------. ( -35.90)
>DroAna_CAF1 2189 110 - 1
UCAUAUUGUUGUCCUGCACAAGGGAUGCUACUACAAGAUGCUCAUCUACUACAAGGGACGCACCCUCCGCCCCUGUGAGCUGCAAGUGUAAGUAU-U-------CC-AAAAAUAUGAAA
(((((((.((((.....))))((((((((..((((....((((((........((((.((.......)).))))))))))......)))))))))-)-------))-...))))))).. ( -30.60)
>consensus
UCACAUUGUGGUGCUGCACAAGGGCUGCUACUACAAGAUGCUCAUCUACUACAAGGGACGCACCCUGCGCCCCUGCGAGCUGCAAGUGUAAGUAA_C______UUG_UGAACUA____U
.(((.(((..((....(.((.((((.((.......((((....))))......((((.....)))))))))).)).).))..))))))............................... (-19.52 = -18.50 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:30 2006