| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,978,917 – 5,979,021 |
| Length | 104 |
| Max. P | 0.578779 |
| Location | 5,978,917 – 5,979,021 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.12 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.28 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5978917 104 - 20766785 UGAAGAUAUGGAAACAGUGCUGAGCGUUGUUCUAAAAUCUUCAGAGAAUGCAACG-----GUGUUG-AAAAAGAAGAGGCAAAAGCUGCGCAAGGUAUCGUUGGAUGAAC---- (((((((.(((((.((((((...)))))))))))..)))))))....((.(((((-----(((...-..........(((....))).(....).)))))))).))....---- ( -25.50) >DroSec_CAF1 21328 108 - 1 UGAAGAUAUGGAAGCUGUGCUGAGCGUUGUUCUAAAAUCUUCAGAGAAUGCAACG-----GUGUUG-AAAAAGAAGAGGCAAAAGCUCCGCAAGGCAUCGUUAGAUGAAGUGAC (((((((.(((((.(..(((...)))..))))))..)))))))........((((-----(((...-..........(((....)))((....)))))))))............ ( -22.60) >DroSim_CAF1 21638 108 - 1 UGAAGAUAUGGAAGCAGUGCUGAGCGUUGUUCUAAAAUCUUCGGAGAAUGCAACG-----GUGUUG-AAAAAGAAGAGGCAAAAGCUCCGCAAGGCAUCGUUAGAUGAAGUGAC .((((((.(((((.((((((...)))))))))))..))))))((((..(((..(.-----.(.((.-...)).).)..)))....)))).((...((((....))))...)).. ( -27.20) >DroEre_CAF1 21661 108 - 1 UGAAGAUAUGGAAGCAGUGCUGAGCGUUGUUCUAAAAUCUUCGGAGAAUAUGCCG-----GCGCAG-AAAAAGAAGAAGCAAAAGCUCCGUAAGGUAUCGUCAGAUGAAGUGAC ......((((((.((.((((((.((((.((((.....((....))))))))))))-----))))..-.....(......)....))))))))...((((....))))....... ( -26.20) >DroYak_CAF1 22485 108 - 1 UGAAGAUAUGGAAGCAGUGCUGAGCGCUGUUCUAAAAUCUUCGGAGAAUAUGCCG-----GUGCAG-AAAAGGAAGAAGCAAAAGCUUCGCAAGAUAUCGUCAGAUGAAGUAAC (((.(((((....((.(..(((.(((.(((((.....((....))))))))))))-----)..)..-........(((((....)))))))...))))).)))........... ( -28.60) >DroMoj_CAF1 42681 111 - 1 UGAAGAUAUGGACGCAGUGCUGUGCGCUACGGCCAAAUCAUCGGAGAAUUUGCCACAACGAAAUCGUAAAAUCAAAAAGCAAAAGCUACGCAAGGCCUCCACAGAUGAAU---C .((.(((.(((.((.(((((...))))).)).))).))).))((((..(((((....(((....)))..........(((....)))..)))))..))))..........---. ( -31.00) >consensus UGAAGAUAUGGAAGCAGUGCUGAGCGUUGUUCUAAAAUCUUCGGAGAAUGCAACG_____GUGUUG_AAAAAGAAGAAGCAAAAGCUCCGCAAGGCAUCGUCAGAUGAAGUGAC (((((((.(((.((((((((...)))))))))))..)))))))..................................(((....)))((....))((((....))))....... (-16.75 = -16.28 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:29 2006