Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,970,276 – 5,970,380 |
Length | 104 |
Max. P | 0.747670 |
Location | 5,970,276 – 5,970,380 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.15 |
Mean single sequence MFE | -18.30 |
Consensus MFE | -9.32 |
Energy contribution | -8.97 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.36 |
Mean z-score | -1.73 |
Structure conservation index | 0.51 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5970276 104 - 20766785 ---CCAAUAAAUUAAAACUAAAACUGAAACUCAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAAAACGCUU-UGGCAAACCGAUAG----- ---..............((...((((....(((((((((....-.)))))))))....(((------......)))))))..))((((((........))-))))..........----- ( -21.80) >DroSec_CAF1 12636 88 - 1 AGUCAAAUAAAUUAAAACUUAAACU------UAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAA--------------ACUGAUAG----- .........................------...(((((.((.-(((((.(((......))------).)))))....))....)))))....--------------........----- ( -14.90) >DroSim_CAF1 13001 88 - 1 AGUCAAAUAAAUUAAAACUAAAAUU------GAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAA--------------ACUGAUAG----- .((((......((((........))------)).(((((.((.-(((((.(((......))------).)))))....))....)))))....--------------..))))..----- ( -15.60) >DroEre_CAF1 12900 106 - 1 -GCCAAAUAAAUUAAAACUAAAACU------GAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGGGAAAAACGCUUUUAGCCAACUAAUAAACUAA -(((.....................------.....(....).-(((((.(((......))------).))))))))(((...(((..(((.......)))..))).))).......... ( -19.10) >DroYak_CAF1 13574 100 - 1 -GCCAAAUAAAUUAAAACUAAAACU------GAAUCGGCAACA-AGUUGAUUGAAAACCCA------ACCAACUGGCAGUGCAGGCCGAGAAAAACGCUU-UGGCCAACUAAUAU----- -(((.....................------.....(....).-(((((.(((......))------).))))))))(((...(((((((........))-))))).))).....----- ( -23.30) >DroAna_CAF1 12707 94 - 1 ---CGAAUAAAUUAAAACCAAAACU------AAAUCGCCAGCAAAGUUGAUUGAAACUCUCUAGAUUGAAAUCUGGCGUGGCGGGGCAAGAAAAACAAAU-CGG---------------- ---..............((......------...((((((((..((((......))))...(((((....))))))).)))))).....((........)-)))---------------- ( -15.10) >consensus _G_CAAAUAAAUUAAAACUAAAACU______GAAUCGGCAACA_AGUUGAUUGAAAACCCA______ACCAACUGGCAGUGCAGGCCGAGAAAAACGCUU_UGG___ACUGAUAG_____ ..................................(((((......(((.......)))..............(((......))))))))............................... ( -9.32 = -8.97 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:28 2006