Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,962,127 – 5,962,220 |
Length | 93 |
Max. P | 0.663668 |
Location | 5,962,127 – 5,962,220 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -27.62 |
Consensus MFE | -21.48 |
Energy contribution | -21.22 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.61 |
Structure conservation index | 0.78 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5962127 93 - 20766785 CACA-------------------------GAACGCUUUCGUUGAGCACCAUAAAAUGCCGAGCACUUGGCUCUUAAAAAACAGUGAAUGUUUUGGUGACAGACUAAAAUAUAUAGAGA (((.-------------------------....((((.....))))..........(((((....)))))............))).((((((((((.....))))))))))....... ( -20.00) >DroSec_CAF1 4670 118 - 1 CACAAAAAGAGUGUCUUGCAGGCACGUAAGAACGCUUUCGUCGAGCACCAUAAAAUGCCGAGCACUUGGCUCUUAAAAAACAGUGAAUGUUUUGGUGACAGACUAAAAUAUAUGGAAA .......((((((((((((......))))).))))))).(((...((((.......(((((....)))))......((((((.....))))))))))...)))............... ( -31.40) >DroSim_CAF1 4777 118 - 1 CACAAAAAGAGUGUCUUGCAGGCACGUAAGAACGCUUUCGUCGAGCACCAUAAAAUGCCGAGUACUUGGCUCUUAAAAAACAGUGCAUGUUUUGGUGACAGACUAAAAUAUAUGGAAA .......((((((((((((......))))).))))))).(((...((((.......(((((....)))))......((((((.....))))))))))...)))............... ( -31.40) >DroYak_CAF1 5036 115 - 1 CAAA---AAAGUGUCUUCCAGGCACGUAAGAGCGCUUUCGUCGAGCACCAUAAAAUGCCGAGCACUUCGCUCCUAAAAAACGGCGAAUGUUUUGGUGACAGACUAGUAUAUAUAGAGG ....---...(((((.....)))))(((..((.((.(((((((.(((........))).((((.....))))........))))))).))((((....))))))..)))......... ( -27.70) >consensus CACA___AGAGUGUCUUGCAGGCACGUAAGAACGCUUUCGUCGAGCACCAUAAAAUGCCGAGCACUUGGCUCUUAAAAAACAGUGAAUGUUUUGGUGACAGACUAAAAUAUAUAGAAA ..........(((((.....)))))..............(((...((((..........((((.....))))....((((((.....))))))))))...)))............... (-21.48 = -21.22 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:24 2006