Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,959,588 – 5,959,681 |
Length | 93 |
Max. P | 0.549282 |
Location | 5,959,588 – 5,959,681 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -16.61 |
Consensus MFE | -12.73 |
Energy contribution | -12.65 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -1.54 |
Structure conservation index | 0.77 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5959588 93 + 20766785 UAUACACAAUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUUCUCUGCCAUUUAUG-CCCCACCUCCUUGCGUUUUUC ..........(((.(((.(....(((((((((((........)))))))......................)-)))..).)))..)))...... ( -14.74) >DroSec_CAF1 2203 86 + 1 UAUA--AAGUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUACCAUUUAUUCUCGGUC-----CC-CCUCCACUCCUUGCGUUUUUC ...(--(((.(((.(((((...((((..((((((........))))))(((..........))).-----.)-))).)).)))..))).)))). ( -14.50) >DroSim_CAF1 2298 89 + 1 UAUA--CAGUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUUCUCGGUCCGC--CC-CCUCCACUCCUUGCGUUUUUC ....--....(((.(((((....(((((((((((........)))))))((..........))...))--))-....)).)))..)))...... ( -18.00) >DroEre_CAF1 2338 85 + 1 U--A--CAGUUGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUACUUGGCC-----CCACCCACACCCCUUGCGUUUUUC .--.--........(((.((((((((..((((((........))))))((((........)))).-----...........))))).))).))) ( -16.70) >DroYak_CAF1 2233 79 + 1 U--A--CAAUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUACUUGGCC-----CCG------CCCCUUGCGUUUUUC .--.--....(((.((....)).((((.((((((........))))))((((........)))).-----..)------)))...)))...... ( -19.10) >consensus UAUA__CAGUCGCCGGAUGACCAGGGCCAAACAAUUAAUCCUUUGUUUGCCAUUUAUUCUCGGCC_____CC_CCCCCACUCCUUGCGUUUUUC ...........(((((........(((.((((((........)))))))))........))))).............................. (-12.73 = -12.65 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:23 2006