Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,421,646 – 1,421,766 |
Length | 120 |
Max. P | 0.879091 |
Location | 1,421,646 – 1,421,766 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -35.28 |
Consensus MFE | -29.38 |
Energy contribution | -30.62 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.09 |
Mean z-score | -1.64 |
Structure conservation index | 0.83 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1421646 120 - 20766785 CUUAAACGGACUGCGACCUUAAAGUAUCCUUGCGGACCUCCAAAGGCGUCGCCUUUCAUCGGACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA ......(((((((.((((((((.........((((.((...((((((...))))))....)).)))).((((......((((........))))..))))))))))))))).)))).... ( -35.10) >DroSec_CAF1 40106 120 - 1 CUUAAACGGACUGCGACCUUAAAGUAUCCUUGCGGACCUCCAGAGGCGUCGCCUUUCAUCGCACCGCUUUGCUCCAGAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA ............((((.......(((....)))(((((((..((((((..((........))..))))))(((.(((.((((........))))))).))).)))))))....))))... ( -35.60) >DroSim_CAF1 45148 120 - 1 CUUAAACGGACUGCGACCUUAAAGUAUCCAUGCGGACCUCCAGAGGCGUCGCCUUUCAUCGCACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA ......(((((((.((((((((........(((((.......((((((..((........))..))))))........((((........))))))))).))))))))))).)))).... ( -32.80) >DroEre_CAF1 38444 107 - 1 ------------GCGACCUUAAAGUAUCCUUGCGGACCUCCA-AGGCGGCGCCUUUCAUCGGACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA ------------((((.......(((....)))(((((((((-((((((..((.......)).)))))))).......((((........))))........)))))))....))))... ( -33.80) >DroYak_CAF1 39470 120 - 1 CUUAAACAGACUGCGACCUUAAAGUAUCCUUGCGGAUCUCCAAAGGCGUCGCCUUUCAUCGGACCGCUUUGCUGCAAAGCACAUAAUUUAGUGCAUGCAGUUGAGGUUCAGUUUCGCCAA .......((((((.(((((((..........((((.(((..((((((...))))))....)))))))...((((((..((((........)))).)))))))))))))))))))...... ( -39.10) >consensus CUUAAACGGACUGCGACCUUAAAGUAUCCUUGCGGACCUCCAAAGGCGUCGCCUUUCAUCGGACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA .......((((((.((((((((.........((((.((...((((((...))))))....)).)))).((((......((((........))))..))))))))))))))))))...... (-29.38 = -30.62 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:27 2006