Locus 159

Sequence ID 2R_DroMel_CAF1
Location 1,421,646 – 1,421,766
Length 120
Max. P 0.879091
window352

overview

Window 2

Location 1,421,646 – 1,421,766
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.58
Mean single sequence MFE -35.28
Consensus MFE -29.38
Energy contribution -30.62
Covariance contribution 1.24
Combinations/Pair 1.09
Mean z-score -1.64
Structure conservation index 0.83
SVM decision value 0.91
SVM RNA-class probability 0.879091
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1421646 120 - 20766785
CUUAAACGGACUGCGACCUUAAAGUAUCCUUGCGGACCUCCAAAGGCGUCGCCUUUCAUCGGACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA
......(((((((.((((((((.........((((.((...((((((...))))))....)).)))).((((......((((........))))..))))))))))))))).)))).... ( -35.10)
>DroSec_CAF1 40106 120 - 1
CUUAAACGGACUGCGACCUUAAAGUAUCCUUGCGGACCUCCAGAGGCGUCGCCUUUCAUCGCACCGCUUUGCUCCAGAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA
............((((.......(((....)))(((((((..((((((..((........))..))))))(((.(((.((((........))))))).))).)))))))....))))... ( -35.60)
>DroSim_CAF1 45148 120 - 1
CUUAAACGGACUGCGACCUUAAAGUAUCCAUGCGGACCUCCAGAGGCGUCGCCUUUCAUCGCACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA
......(((((((.((((((((........(((((.......((((((..((........))..))))))........((((........))))))))).))))))))))).)))).... ( -32.80)
>DroEre_CAF1 38444 107 - 1
------------GCGACCUUAAAGUAUCCUUGCGGACCUCCA-AGGCGGCGCCUUUCAUCGGACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA
------------((((.......(((....)))(((((((((-((((((..((.......)).)))))))).......((((........))))........)))))))....))))... ( -33.80)
>DroYak_CAF1 39470 120 - 1
CUUAAACAGACUGCGACCUUAAAGUAUCCUUGCGGAUCUCCAAAGGCGUCGCCUUUCAUCGGACCGCUUUGCUGCAAAGCACAUAAUUUAGUGCAUGCAGUUGAGGUUCAGUUUCGCCAA
.......((((((.(((((((..........((((.(((..((((((...))))))....)))))))...((((((..((((........)))).)))))))))))))))))))...... ( -39.10)
>consensus
CUUAAACGGACUGCGACCUUAAAGUAUCCUUGCGGACCUCCAAAGGCGUCGCCUUUCAUCGGACCGCUUUGCUCCAAAGCACAUAAUUUAGUGCCUGCAGUUGAGGUUCAGUUUCGCCAA
.......((((((.((((((((.........((((.((...((((((...))))))....)).)))).((((......((((........))))..))))))))))))))))))...... (-29.38 = -30.62 +   1.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:27 2006