Locus 1588

Sequence ID 2R_DroMel_CAF1
Location 5,954,981 – 5,955,076
Length 95
Max. P 0.963583
window2666

overview

Window 6

Location 5,954,981 – 5,955,076
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 80.11
Mean single sequence MFE -22.85
Consensus MFE -16.00
Energy contribution -16.80
Covariance contribution 0.80
Combinations/Pair 1.11
Mean z-score -2.28
Structure conservation index 0.70
SVM decision value 1.55
SVM RNA-class probability 0.963583
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5954981 95 + 20766785
UUAAAUUGCCUGCUUUCCUUUAACUCUUAACUCUUUGAAACAACAACAGGUAAUUACAACCGACCUUAACUAUUUUGGGGCGGUGGUGCCAGAAU
...(((((((((......(((((...........))))).......)))))))))((.((((.((((((.....)))))))))).))........ ( -19.52)
>DroSec_CAF1 9411 75 + 1
UUAAAUUGCCUGUU--------------------UUGACACAACAACAGGUAAUUACCGCCGCCCUUAACUAUUUUGGGGCGGUGGUGCCAGAAU
...(((((((((((--------------------(((...))).)))))))))))(((((((((((..........)))))))))))........ ( -33.80)
>DroSim_CAF1 10318 95 + 1
UUAAAUUGCCUGCUUUCUUUUGACUCUUAACUCUUUGACACAACAACAGGUAAUUACCGCCGCCCUUAACUAUUUUGGGGCGGUGGUGCCAGAAU
...(((((((((...((....))...........(((......))))))))))))(((((((((((..........)))))))))))........ ( -30.50)
>DroEre_CAF1 9687 94 + 1
UUAAAUUGCCCGCUUUCCCUUAACUCUUAACUCUUUGACACAACAACAGGUAAUUAGCGCCGCCUUCAACU-UUUUGGGGCGGUAGUGCCAGAAU
.................................((((.(((........((.....))(((((((.(((..-..)))))))))).))).)))).. ( -17.50)
>DroYak_CAF1 10536 92 + 1
UUAAAUUGCCUUUUUUCCCUAAACUUUAAACUCUUUGAA---AGAAUAAGUAAUUACCGCCGACUUUACCUAUUUUGGGACGGUAGUGCCAGAAU
...((((((.(((((((...................)))---))))...))))))................(((((((.((....)).))))))) ( -12.91)
>consensus
UUAAAUUGCCUGCUUUCCCUUAACUCUUAACUCUUUGACACAACAACAGGUAAUUACCGCCGCCCUUAACUAUUUUGGGGCGGUGGUGCCAGAAU
...(((((((((..................................)))))))))((.((((((((..........)))))))).))........ (-16.00 = -16.80 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:18 2006