Locus 1582

Sequence ID 2R_DroMel_CAF1
Location 5,942,187 – 5,942,291
Length 104
Max. P 0.909407
window2652

overview

Window 2

Location 5,942,187 – 5,942,291
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.25
Mean single sequence MFE -20.71
Consensus MFE -17.74
Energy contribution -18.22
Covariance contribution 0.48
Combinations/Pair 1.09
Mean z-score -1.94
Structure conservation index 0.86
SVM decision value 1.06
SVM RNA-class probability 0.909407
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5942187 104 + 20766785
UUUUGGAAGUUGUUUGUGUUUGCUAG--------CCUCCUUACCCCUCCCUUCGUCACUCCUCACGUAUACACACACAGCAUCUGCAUAUGCACUUCAUCCGCUCUCUC------UU--G
....(((.(((((.(((((.(((...--------...............................))).))))).)))))...(((....))).....)))........------..--. ( -16.98)
>DroSec_CAF1 84273 103 + 1
UUUUGGAUGUUGUUUGUGUUUUCUAGUGUCCCUGCCUCCUUACCCCUCCCUUCGCCACUCCUCACGUAUACACACACAGCAUCUGCAUAUGCACUUCAUCCGC-----------------
....(((((((((.(((((......(((.....((..................)).......)))....))))).)))))))))((....))...........----------------- ( -19.77)
>DroSim_CAF1 82121 114 + 1
UUUUGGAUGUUGUUUGUGUUUGCUAGUGUCCCUGCCUCCUUACCCCUCCCUUCGCCGCUCCUCACGUAUACACACACAGCAUCUGCAUAUGCACUUCAUCCGCUCUCUC------UUUGG
....(((((((((.(((((.(((..(((.....((.....................))....)))))).))))).)))))))))((....)).................------..... ( -22.70)
>DroEre_CAF1 69399 118 + 1
UUUUGGAUGUUGUUUGUGUUUGCUAGUGUCCCCGCCUCCCUACCCCUCCCUUUGCCAUUCCUCACGUAUACACACACAGCAUCUGCAUAUGCACUUCAUCGGAUCUCUCUCUGUCUC--G
....(((((((((.(((((.(((..(((.....((..................)).......)))))).))))).)))))))))((....)).......((((......))))....--. ( -22.77)
>DroYak_CAF1 87021 108 + 1
UUUUAGAUGUUGUUUGUGUUUGCUAGUGUCCUCGCUUUCCUACCCC----UUCGCCACUUCUCACGUAUACACACACGGCAUCUGCAUAUGCACUUCAUCGGCUGUCUC------UC--C
....(((((((((.(((((.(((..(((.....((...........----...)).......)))))).))))).)))))))))((....)).................------..--. ( -21.34)
>consensus
UUUUGGAUGUUGUUUGUGUUUGCUAGUGUCCCCGCCUCCUUACCCCUCCCUUCGCCACUCCUCACGUAUACACACACAGCAUCUGCAUAUGCACUUCAUCCGCUCUCUC______UC__G
....(((((((((.(((((.(((..(((..................................)))))).))))).)))))))))((....))............................ (-17.74 = -18.22 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:04 2006