Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,932,613 – 5,932,733 |
Length | 120 |
Max. P | 0.713200 |
Location | 5,932,613 – 5,932,733 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -37.76 |
Consensus MFE | -35.33 |
Energy contribution | -35.44 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.94 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5932613 120 + 20766785 CCCUGGGCAGCCACACGCAACUGCAUCAGAAAGACGCUGGUGCUCAUGCUGCCUCGGUUCCGAUAUUUGUAGGCUCCAAUCAAACCUGCGGCCACGAAUCCGGCAAUACCCACCAGCAUA ..((((((((..........)))).))))......(((((((....(((((..(((....))).((((((.((((.((........)).)))))))))).))))).....)))))))... ( -38.30) >DroSec_CAF1 75059 120 + 1 CCCUGGGCAGCCACACGCAACUGCAUCAGAAAGACGCUGGUGCUCAUGGUGCCUCGGUUCCGAUAUUUGUAGGCUCCAACCAAACCUGCGGCCACGAAUCCGGCAAUACCAACCAGCAUG ..((((((((..........)))).))))......((((((........(((((((....))).((((((.((((.((........)).))))))))))..))))......))))))... ( -37.34) >DroYak_CAF1 77726 120 + 1 CCCUGGGCAGCCACACGCAGCUGCAUCAAAAAGACGCUGGUACUCAUGGUGCCUCGGUUCCGAUAUUUGUAGGCUCCAACCAAACCUGCGGCCACAAAUCCGGCAAUACCCACCAGCAUA ...((((((((........))))).))).......((((((........(((((((....))).((((((.((((.((........)).))))))))))..))))......))))))... ( -37.64) >consensus CCCUGGGCAGCCACACGCAACUGCAUCAGAAAGACGCUGGUGCUCAUGGUGCCUCGGUUCCGAUAUUUGUAGGCUCCAACCAAACCUGCGGCCACGAAUCCGGCAAUACCCACCAGCAUA ..((((((((..........)))).))))......((((((........(((((((....))).((((((.((((.((........)).))))))))))..))))......))))))... (-35.33 = -35.44 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:52 2006