Locus 1574

Sequence ID 2R_DroMel_CAF1
Location 5,932,457 – 5,932,573
Length 116
Max. P 0.990843
window2638

overview

Window 8

Location 5,932,457 – 5,932,573
Length 116
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 73.03
Mean single sequence MFE -24.65
Consensus MFE -19.32
Energy contribution -19.43
Covariance contribution 0.12
Combinations/Pair 1.17
Mean z-score -1.62
Structure conservation index 0.78
SVM decision value 2.23
SVM RNA-class probability 0.990843
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5932457 116 + 20766785
UCACCAUUUUAUGUAUGUAUUUUUGGUCUUUGGCCGAUGAUCCUACUAUAUC----UUAUUUAUUCGUCUGGCCUGGUAUUGCUUUUCGGUUCCUCGUGGAGCAGGUACUCCUUGGCCAU
.......................(((((...(((((((((............----........))))).)))).((((((((((..(((....)))..))))).)))))....))))). ( -28.55)
>DroSec_CAF1 74903 116 + 1
UCACCAUUUGAUGUAUUUAUGUUUGGUCUUUGGCUAAUAAUCCUACUAUACU----UUAUUUAUUCGCCUGGCCUGGUAUUGCUUUUCGGUUCCUCAUGGAACAGGUACUCCUUGGCCAU
..((((..(((.....)))....))))....(((.(((((............----....))))).)))(((((.((...(((((....(((((....))))))))))..))..))))). ( -26.79)
>DroYak_CAF1 77588 98 + 1
----------------------UUGGUUUACACCUCAUAAUACUACUCUUAUUUAUUUAUUUAUUCGUCUGGCCUGGUAAUGCUUUGCGGCUCCUCGUGGAUCAGGUACUCCUUGGCCAU
----------------------..(((....)))...................................(((((.((((.((.((..(((....)))..)).))..))))....))))). ( -18.60)
>consensus
UCACCAUUU_AUGUAU_UAU_UUUGGUCUUUGGCUAAUAAUCCUACUAUAAU____UUAUUUAUUCGUCUGGCCUGGUAUUGCUUUUCGGUUCCUCGUGGAACAGGUACUCCUUGGCCAU
......................((((((...))))))................................(((((.((...(((((....(((((....))))))))))..))..))))). (-19.32 = -19.43 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:51 2006