Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,928,197 – 5,928,314 |
Length | 117 |
Max. P | 0.999582 |
Location | 5,928,197 – 5,928,314 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -24.16 |
Energy contribution | -24.04 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.24 |
Structure conservation index | 0.93 |
SVM decision value | 3.75 |
SVM RNA-class probability | 0.999582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5928197 117 - 20766785 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA-AACAGGUACGAAAACAUACUCCCUCGGUGCCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACUAGAAA-- ((((((..(((.....))).(((((...(((((......-....)))))...)))))........))))))...........((((((......))))))..................-- ( -22.90) >DroSec_CAF1 70133 118 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA-AA-AGGUACGAAAACAUACUCCCUCGACGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACAAAAAAGC (((...((.(((((......(((((...(((((......-..-.)))))...)))))..((....)).))))).))......((((((......)))))).)))................ ( -26.50) >DroSim_CAF1 66103 118 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA-AA-AGGUACGAAAACAUACUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACAAAACAAA (((...((.(((((......(((((...(((((......-..-.)))))...)))))...((...)).))))).))......((((((......)))))).)))................ ( -26.80) >DroEre_CAF1 60950 116 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAAAAA-AGGUACAAAAACAUAUUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAAAAAA-CA-- (((...((.(((((......(((((...(((((.........-.)))))...)))))...((...)).))))).))......((((((......)))))).)))...........-..-- ( -25.60) >DroYak_CAF1 64082 114 - 1 GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAA--AA-AGGUACGAAAACAUACUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGGAUGUCGCCAAAAUAUAAAA-UA-- ((((.(((((((((......(((((...(((((.....--..-.)))))...)))))...((...)).)))))((((((.....))))))..)))).))))..............-..-- ( -28.40) >consensus GGCACCCGUUGGCCAUCAAAGUGUUAAAGUGCUAUAAAA_AA_AGGUACGAAAACAUACUCCCUCGGCGGCCAUUGAAUAAUGCAUUCAAUUACGAAUGUCGCCAAAAUAACAAAAAA__ (((...((.(((((......(((((...(((((...........)))))...))))).(......)..))))).))......((((((......)))))).)))................ (-24.16 = -24.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:50 2006