Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,927,636 – 5,927,744 |
Length | 108 |
Max. P | 0.699175 |
Location | 5,927,636 – 5,927,744 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.94 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -17.12 |
Energy contribution | -17.80 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -1.56 |
Structure conservation index | 0.80 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5927636 108 - 20766785 AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA ........((((((.....((((((.....(((...((((......))))..)))...((((((((.........))))).)))......).)))))...)))))).. ( -24.00) >DroSec_CAF1 69539 108 - 1 AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA ........((((((.....((((((.....(((...((((......))))..)))...((((((((.........))))).)))......).)))))...)))))).. ( -24.00) >DroSim_CAF1 65497 108 - 1 AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA ........((((((.....((((((.....(((...((((......))))..)))...((((((((.........))))).)))......).)))))...)))))).. ( -24.00) >DroEre_CAF1 60338 100 - 1 AUUAUUCAAAGCUUCAAAAGGUGCCACAGU--------AAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAAUCGUUAGACAGAUCAGACCGCCAUAAGCAUUAA ..........((((.....(((((......--------.....)).......((((..((((((((.........))))).)))...))))))).....))))..... ( -14.20) >DroYak_CAF1 63463 107 - 1 AUU-UUUAAAGGUUCAUAAGAUGGCACAAAAAAGAGUAAAAUCGCAUUUUAAUUGAAAGUCAGCGGUACCCAAACCCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA ...-....((((((......(((((........((......)).........((((..((((((((.........))))).)))...))))...))))).)))))).. ( -21.20) >consensus AUUAUUUAAAGGUUCAAAAGGUGGCACAAACAAGAGUAAAAUCGCAUUUAAAUUGAAAGUCAGCGGGACCCAAAACCGUUAGACAGAUCAGACCGCCAUAAGCCUUAA ........((((((......(((((........((......)).........((((..((((((((.........))))).)))...))))...))))).)))))).. (-17.12 = -17.80 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:49 2006