Locus 1570

Sequence ID 2R_DroMel_CAF1
Location 5,921,888 – 5,922,008
Length 120
Max. P 0.828657
window2631

overview

Window 1

Location 5,921,888 – 5,922,008
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -35.70
Consensus MFE -28.90
Energy contribution -28.78
Covariance contribution -0.12
Combinations/Pair 1.21
Mean z-score -1.69
Structure conservation index 0.81
SVM decision value 0.71
SVM RNA-class probability 0.828657
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5921888 120 + 20766785
UAUCUUCCAGGCGGCUGGAACACCGGCAACAUGGCCACGGAACCCUCGUUCCGAAUGUAAUAUACCCCUGGCUUAAUUGGGCAACUAAAGAAACUGCCAUUCACGACCAGCCGUUUGUAU
.......(((((((((((.(((..(((......))).((((((....))))))..)))..........((((....((((....)))).......)))).......)))))))))))... ( -41.70)
>DroSec_CAF1 63879 120 + 1
UAUCUUCCAGGCGGCUGGAACACCGGCAACAUGGCCACGGAACCCUCGUUCCUUAUGUAAUAUACCCCCGGCUUGAUGGGGCAACUGAAGAAACUACCAUUCACGACCAGCCGUUUGUAU
.......(((((((((((.(((..(((......)))..(((((....)))))...))).......(((((......))))).........................)))))))))))... ( -38.50)
>DroSim_CAF1 57319 120 + 1
UAUCUUCCAGGUGGCUGGAACACCGGCAACAUGGCCACGGAACCCUCGUUCCUGAUGAAAUACACCCCCGGCUUAAUCGGGCAACUGAAGAAACUGCCAUUUACGACCAACCGUUUGUAU
((((......((((((((....))(....)..))))))(((((....))))).))))..(((((.....(((....((((....)))).......)))....(((......))).))))) ( -31.80)
>DroEre_CAF1 54798 120 + 1
UAUCUUCCUGGCGGCUGGAAAACCGGCAACAUAUCCACGGAACCCUCGUUCCUGAUGUAAUAUACACCUGGCUUAAUCGGGCAACUAAAGAAACUGCCAUUGACGAUCAGACGUUGGUAU
.........(((((((((....)))))...(((((...(((((....))))).)))))........(((((.....))))).............))))((..(((......)))..)).. ( -29.20)
>DroYak_CAF1 57939 120 + 1
UAUCUUCCAGGCGGCUGGAAAGCCGGCAACAUGGCCACGGAACCCUCGUUCCUGAUGUAAUAUACCCCUGGCCUGAUCGGACAACUAAAAAAACUGCCAUUCACGACCAGUCGCUUGUAG
.......(((((((((((...((((((......)))..(((((....))))).................))).(((..((.((...........))))..)))...)))))))))))... ( -37.30)
>consensus
UAUCUUCCAGGCGGCUGGAACACCGGCAACAUGGCCACGGAACCCUCGUUCCUGAUGUAAUAUACCCCUGGCUUAAUCGGGCAACUAAAGAAACUGCCAUUCACGACCAGCCGUUUGUAU
.......(((((((((((......(((......)))..(((((....))))).................(((......((....)).........)))........)))))))))))... (-28.90 = -28.78 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:44 2006