Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,908,724 – 5,908,824 |
Length | 100 |
Max. P | 0.519876 |
Location | 5,908,724 – 5,908,824 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.44 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -16.16 |
Energy contribution | -17.13 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.18 |
Mean z-score | -1.49 |
Structure conservation index | 0.60 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5908724 100 + 20766785 UUAGGGU------CUAACAAAAAACUUUCAAAGGGUUCGCUACAGCUCAAAGAUGU--------------CCCCGACUGGAUUACACAUUCCGGUCAAUAUGUGGAGCCCAAAUGUUCCC ...((((------...(((.............(((..((((.........)).)).--------------.)))(((((((........)))))))....)))...)))).......... ( -25.80) >DroSec_CAF1 50767 100 + 1 UUUGGGU------CUAACAAAAAACUUUCAAAGGGUUUGCCAGAGCUCAAAGAUGU--------------CCCCGACUGGAUUACACAUUCCGGUCAAUAUGUGGAGCCCAAAUGCUGCC (((((((------...(((.............((((((....))))))........--------------....(((((((........)))))))....)))...)))))))....... ( -27.50) >DroSim_CAF1 43961 100 + 1 UUUGGGU------CUGACAAAAAACUUUCAAAGGGUUUGCCAGAGCUCAAAGAUGU--------------CCCCGACUGGAUUACACAUUCCGGUCAAUAUGUGGAGCCCAAAUGCUGCC ((((((.------.(.(((.............((((((....))))))........--------------....(((((((........)))))))....))).)..))))))....... ( -28.90) >DroEre_CAF1 42986 100 + 1 UUAGGGU------CGAACAAAAAACUUUCAAAGGGUUUGACAGAGCCGAAAUAUGU--------------CCCCGACUGGAUUACACAUUCCGGUCAAUAUAUGGAGCCCAAAUGGUCCC ...((..------((((.........)))...((((((((((...........)))--------------)...(((((((........)))))))........))))))....)..)). ( -26.80) >DroYak_CAF1 43251 106 + 1 UUAGGGUUUAGCCCGAACAAAAAAAUUUCAAAGGGUUUUACAGAGGUCAAAGAUGU--------------ACCCGACUGGAUUACACAUUCCGGUCAAUGUGUGGAGCCCAAAUGGUCCC ...(((.....)))..................((((((((((.((((((....)).--------------))).(((((((........)))))))..).)))))))))).......... ( -33.40) >DroAna_CAF1 50220 108 + 1 UUAAGGG------CUUACA--AAACUUUCCAAGGGUU-GACAAAUUUCAAAGUUGUUUGAACCAUUUUUGCGCUGACUCGAUUACAUAUUCCGGUCAAUAUUUGGGC---CAUUUCCCCC .....((------((..((--(..((.....))..))-).(((((((((((....))))))............(((((.((........)).)))))..))))))))---)......... ( -18.40) >consensus UUAGGGU______CUAACAAAAAACUUUCAAAGGGUUUGACAGAGCUCAAAGAUGU______________CCCCGACUGGAUUACACAUUCCGGUCAAUAUGUGGAGCCCAAAUGCUCCC ...((((.........................((((((....))))))..........................(((((((........)))))))..........)))).......... (-16.16 = -17.13 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:37 2006