| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,908,001 – 5,908,104 |
| Length | 103 |
| Max. P | 0.839841 |
| Location | 5,908,001 – 5,908,104 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 89.65 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.28 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5908001 103 + 20766785 CAUACUAAAAGAACCAGAAGGCGAAAUGAGGUGCAGGAGCAAUCGAACCGCCAUCAAUUCAUUUGGGAAUUCAAAAACAUCAAAAUACAAU-------AGGUU---CCCCCAC ..........(((((.((.((((...(((..(((....))).)))...)))).))(((((......)))))....................-------.))))---)...... ( -21.20) >DroSec_CAF1 50030 105 + 1 CAUACUAAAAGAACCAGAAGGCGAAAUGAGGUGCAGGAGCAACCGAACCGCCAUAAAUUCAUUUGGGAAUUCAAAAACAUCAAAAUACAAU-------AGGUUCU-CCCCCAC .........((((((....((((......(((((....)).)))....))))...(((((......)))))....................-------.))))))-....... ( -21.00) >DroSim_CAF1 43225 105 + 1 CAUACUAAAAGAACCAGAAGGCGAAAUGAGGUGCAGGAGCAACCGAACCGCCAUCAAUUCAUUUGGGAAUUCAAAAACAUCAAAAUACAAU-------AGGUUCU-CCCCCAC .........((((((.((.((((......(((((....)).)))....)))).))(((((......)))))....................-------.))))))-....... ( -22.30) >DroEre_CAF1 42237 103 + 1 CAUACUAAAAGAACCAAAUGGCAAAAUGUGGUGCAGAAGCAACCGAACCGCCAUCAAUUCAUUUGGGAAUUCAAAAACAUCAAAAUACAAU-------AGGUUCC---CCCAC ..........(((((..(((((......((((((....)).))))....))))).(((((......)))))....................-------.))))).---..... ( -19.50) >DroYak_CAF1 42568 112 + 1 CAUACUAA-AGAAACAAAAGGUGAAUUGAGGUGCAGAAGCAACCUAACCGCCAUCAAUUCGUUUGGGAAUUCAAAAACAUCCAAAUACAAUACAAUACAGGUUCCCCCCCCAC ........-..........((.(((((((((((.((.......))...)))).)))))))....(((((((............................)))))))...)).. ( -17.99) >consensus CAUACUAAAAGAACCAGAAGGCGAAAUGAGGUGCAGGAGCAACCGAACCGCCAUCAAUUCAUUUGGGAAUUCAAAAACAUCAAAAUACAAU_______AGGUUCC_CCCCCAC ..........(((((....((((......(((((....)).)))....))))...(((((......)))))............................)))))......... (-16.00 = -16.28 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:36 2006