| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,902,704 – 5,902,804 |
| Length | 100 |
| Max. P | 0.946123 |
| Location | 5,902,704 – 5,902,804 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.25 |
| Mean single sequence MFE | -32.43 |
| Consensus MFE | -23.51 |
| Energy contribution | -23.71 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5902704 100 - 20766785 ACCAUUC---AAGCCU--UUUGUACA---------------UCUAGUGACCUUUCUUCCUCUACCAUUUGAAUGGGGGAAAAGGUCACGCUUUGUGCAAGAAUUGGGUUCAAAGCGCUGC ...((((---((...(--((((((((---------------....(((((((((..(((((((.........))))))))))))))))....))))))))).))))))............ ( -33.20) >DroSec_CAF1 44726 100 - 1 GCCAUGC---AAGCCU--UUUGUACA---------------UCUAGUGACCUUUCUUCCUGAACCAUUUGAAUGGGGGAAAAGGUCACGCUUUGUGGCAGAAUUGGGUUCAAAGCGCUGC .....((---(.((.(--((((...(---------------(((((((((((((..((((...((((....)))))))))))))))))(((....))).....))))).))))).))))) ( -32.00) >DroSim_CAF1 37848 100 - 1 GCCAUGC---AAGCCU--UUUGUACA---------------UCUAGUGACCUUUCUUCCUGAACCAUUUGAAUGGGGGAAAAGGUCACGCUUUGUGCCAGAAUUGGGUUCAAAGCGCUGC .....((---(.((..--........---------------....(((((((((..((((...((((....)))))))))))))))))((((((.(((.......))).))))))))))) ( -34.80) >DroEre_CAF1 37046 98 - 1 ACCAUGC---AAGCCU--UUUGUACA---------------UCUUGUGACCUUUCCUCCUGAACCUUUUGAAUGGGGGAAAAGGUCACGGUUU--GCAAAAGCUGGGUUCAAAGCGCUGC ....(((---(((((.--...(....---------------.)..((((((((((((((..............))))).))))))))))))))--)))...(((........)))..... ( -34.44) >DroYak_CAF1 37120 102 - 1 ACCAUGG---AAGCUUUUUUUGUACA---------------UCUUGUGGCCUUACUUCCUGAACCUUUAGAAUGGGGGAAAAGGUCACGCUUUGUGCAAAAAUUGGGUUCAAAGCGCUGC ......(---((.((.((((((((((---------------...(((((((((..(((((...((........))))))))))))))))...))))))))))..)).))).......... ( -33.10) >DroAna_CAF1 43914 117 - 1 GCCAUUUUCCAUUUAU--UUUG-GCAACUGCUUGGCUGUGAUAGGGCGACCUUCCUGGUUCAACCAUUUGAAUGCCAGAAAAGGUCAACUUUUGUGCAAAAAUUGAGUUCAAAACGCUGC ((((............--..))-))........(((((((..(((..((((((.(((((((((....))))..)))))..))))))..)))...))))....(((....)))...))).. ( -27.04) >consensus ACCAUGC___AAGCCU__UUUGUACA_______________UCUAGUGACCUUUCUUCCUGAACCAUUUGAAUGGGGGAAAAGGUCACGCUUUGUGCAAAAAUUGGGUUCAAAGCGCUGC ...........(((...............................((((((((((((((..............))))).)))))))))((((((.((.........)).))))))))).. (-23.51 = -23.71 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:35 2006