| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,898,823 – 5,898,913 |
| Length | 90 |
| Max. P | 0.611294 |
| Location | 5,898,823 – 5,898,913 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 91.40 |
| Mean single sequence MFE | -21.48 |
| Consensus MFE | -17.39 |
| Energy contribution | -16.95 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5898823 90 + 20766785 GAGCAAAUUUAAUGGCUGCAGCACAUGGU---GUUCAGAUUUA-AUUUGCGCAUAUUUGCCAGAUUUAUGGAAAACAAUUAUGCAUAAAUUGUG ..(((((((......(((.(((((...))---))))))....)-))))))(((((.((((((......)))....))).))))).......... ( -22.50) >DroSec_CAF1 35169 93 + 1 GAGCAAAUUUAAUGGCUGUAGCACAUGGUGGGGUUCAGAUUUA-AUUUGCGCAUAUUUUCCAGAUUUAUGGAAAACAAUUAUGCAUAAAUUGUG ..(((((((...(((((.((.(....).)).)).))).....)-))))))((((((((((((......)))))))....))))).......... ( -22.80) >DroSim_CAF1 33939 93 + 1 GAGCAAAUUUAAUGGCUGCAGCACAUGGUGGGGUUCAGAUUUA-AUUUGCGCAUAUUUGCCAGAUUUAUGGAAAACAAUUAUGCAUAAAUUGUG ..(((((((...(((((.((.(....).)).)).))).....)-))))))(((((.((((((......)))....))).))))).......... ( -22.20) >DroYak_CAF1 33349 91 + 1 GAGUAAAUUUAAUAGCUGCGGCACAUGGC---GCUCAGAUUUAUAUUUGCGCAAAGUUGCUGGAUUUAUGGAAAACAAUUAUGCAUAAAUUGUG ..(((((((((.(((((((........))---((.(((((....))))).))..))))).))))))))).....((((((.......)))))). ( -18.40) >consensus GAGCAAAUUUAAUGGCUGCAGCACAUGGU___GUUCAGAUUUA_AUUUGCGCAUAUUUGCCAGAUUUAUGGAAAACAAUUAUGCAUAAAUUGUG ..((((((.(((...(((.(((..........))))))..))).))))))(((((.((((((......)))....))).))))).......... (-17.39 = -16.95 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:34 2006