Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,897,098 – 5,897,213 |
Length | 115 |
Max. P | 0.544390 |
Location | 5,897,098 – 5,897,213 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.91 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -18.87 |
Energy contribution | -19.15 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.58 |
Structure conservation index | 0.71 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5897098 115 - 20766785 ACGGCGAAUUCCUCAAAGGAAUUCGUGAAA-UUCGCAAAUGACUUCUGGCAUUCCGUAGUGGUCUUUGCUUUCGUCGUGGGCCGCAAUUCAUUUUUCCCCUC----ACACACCCAUAAAA ...(((((((((.....)))))))))((((-...(((((.((((.(((........))).)))))))))))))((.(((((..(.((......)).)..)))----)))).......... ( -28.40) >DroSec_CAF1 33450 112 - 1 ACGGCGAAUUCCUCAAAGGAAUUCGUAAAA-UUCGCAAAUGACUUCUGGCAUUCCGUAGUGGUCUUUGCUUUC---GUGGGCCGCAUUUCAUUUUUCCCCUC----ACAUACCCAUACAG ...(((((((((.....)))))))))....-...(((((.((((.(((........))).)))))))))....---(((((.....................----.....))))).... ( -27.27) >DroSim_CAF1 32209 112 - 1 ACGGCGAAUUCCUCAAAGGAAUUCGUGAAA-UUCGCAAAUGACUUCUGGCAUUCCGUAGUGGUCUUUGCUUUC---GUGGGCCGCAUUUCAUUUUUCCCCUC----GCAUACCCAUAAAA ...(((((((((.....)))))))))((((-...(((((.((((.(((........))).)))))))))))))---(((((..((.................----))...))))).... ( -29.93) >DroEre_CAF1 31533 105 - 1 GCGGCGAAUUCCUCUAAGGAAUUUGUGAAA-UUCGCAAAUGACUUUUCGCAUUCCGUAGUGGUCUUUGCUUUC---AUGGCCCGCAUUUCAUCUU-UCCCUC----ACAUGCCC------ ((((((((((((.....)))))))((((((-...(((((.((((...((.....))....)))))))))))))---)).).))))..........-......----........------ ( -26.20) >DroYak_CAF1 31632 112 - 1 AAGGCGAAUUCCUCAAAGGAAUUUGUGAAA-UUCGCAAAUGACUUUUCGCAUUCCGUAGUGGUCUUUGCUUUC---AUGGACCGCAUUUCAUCUUUUCCCUU----ACAUGCCCAUAAAA ..(((((((.(...((((..(((((((...-..)))))))..))))..).))))....(((((((.((....)---).))))))).................----....)))....... ( -27.50) >DroAna_CAF1 36837 117 - 1 CUGGCAAAUUCCUUGCCGGAAUCUAGAAAAUUUUGCAAAUGACUUUACGCAUUCCGAAGUGGUCUUUGCUUUC---AUCGGCAUCGUUUCAUUUUCCCCCACCAGAACAUUCUCAUAAAA (((((((.....))))))).....((((..(((((.((((((....(((.((.((((.(.(((....)))..)---.)))).))))).))))))........)))))..))))....... ( -21.30) >consensus ACGGCGAAUUCCUCAAAGGAAUUCGUGAAA_UUCGCAAAUGACUUCUCGCAUUCCGUAGUGGUCUUUGCUUUC___AUGGGCCGCAUUUCAUUUUUCCCCUC____ACAUACCCAUAAAA ...(((((((((.....)))))))))........(((((.((((....((.....))...)))))))))................................................... (-18.87 = -19.15 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:33 2006