Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,895,718 – 5,895,824 |
Length | 106 |
Max. P | 0.873557 |
Location | 5,895,718 – 5,895,824 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.96 |
Mean single sequence MFE | -29.41 |
Consensus MFE | -25.31 |
Energy contribution | -25.73 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.10 |
Mean z-score | -2.08 |
Structure conservation index | 0.86 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5895718 106 - 20766785 CCAACAGAAAAGGCCAACAUUAACGGCCACAACAAUUUGCUUUCACUGAAAUUGCCAAUUAGGCAAGAGGGCAGUUGCAAAUGCAGCAGGAGC--------------ACUGAAGGCCAAC ((..(((....((((.........)))).........((((((..((....(((((.....)))))..))...(((((....))))).)))))--------------))))..))..... ( -30.30) >DroSec_CAF1 32083 106 - 1 CCAACAGAAUAGGCCACCAUUAACGGCCACAACAAUUUGCUUUCAUUGAAAUUGCCAAUUAGGCAAGAGGGCAGUUGCAAAUGCAGCAGGACC--------------ACUGAAGGCCAAC ...........((((..((.....((((.........(((((((.......(((((.....))))))))))))(((((....))))).)).))--------------..))..))))... ( -30.81) >DroSim_CAF1 30849 106 - 1 CCAAGAGAAAAGGCCACCAUUAACGGCCACAACAAUUUGCUUUCACUGAAAUUGCCAAUUAGGCAGGAGGGCAGUUGCAAAUGCAGCAGGACC--------------ACUGAAGGCCAAC ...........((((..((.....((((.........(((((((.......(((((.....))))))))))))(((((....))))).)).))--------------..))..))))... ( -30.51) >DroEre_CAF1 30150 106 - 1 CCAACAGAAACGGACACCGUUAACGGCCACGACAAUUUGCUUUCACUGAAAUUGCCAAUUAGGCAAGAGGGCAGUUGCAAAUGCAGCAGCACC--------------ACUGAAGGCCAAC ........(((((...)))))...((((.........(((((((.......(((((.....))))))))))))(((((....)))))......--------------......))))... ( -31.71) >DroYak_CAF1 30230 106 - 1 CCAACAGAAACGGCAGCCAUUAACGGCCACGACAAUUUGCUUUCACUGAAAUUGCCAAUUAGGCAAGAGGGCAGUUGCAAAUGCAGCAGCAGC--------------ACUGAAGGCCAAC ..........((...(((......)))..)).......(((((((.((...(((((.....)))))....((.(((((....))))).))..)--------------).))))))).... ( -30.00) >DroAna_CAF1 35602 112 - 1 GUAACAGAAA------ACAUUAACGACCACGACAAGUUGCUUUCACUGAAAUUGCCAAUUAGUC--GAGGGCAGCUGCAAAUGCAGCAGUACCUAGUACCAUCAGCAGCAGAAGGCCAUC ..........------..........((.((((.((((((.............).))))).)))--).))((.(((((....))))).((((...)))).....)).((.....)).... ( -23.12) >consensus CCAACAGAAAAGGCCACCAUUAACGGCCACAACAAUUUGCUUUCACUGAAAUUGCCAAUUAGGCAAGAGGGCAGUUGCAAAUGCAGCAGGACC______________ACUGAAGGCCAAC ........................((((.........(((((((.......(((((.....))))))))))))(((((....)))))..........................))))... (-25.31 = -25.73 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:32 2006