Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,420,844 – 1,420,963 |
Length | 119 |
Max. P | 0.960134 |
Location | 1,420,844 – 1,420,963 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -34.58 |
Consensus MFE | -29.98 |
Energy contribution | -29.90 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.77 |
Structure conservation index | 0.87 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1420844 119 + 20766785 -AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUC -......((((.((((((((......((((.......))))..))))).(((((((.....(((((...)))))..........(((((.....)))))..)))))))..)))...)))) ( -35.00) >DroSec_CAF1 39275 119 + 1 -AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUCGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUU -......((((.((((((((.((...((((.......))))))))))).(((((((.....(((((...)))))..........(((((.....)))))..)))))))..)))...)))) ( -34.30) >DroSim_CAF1 44329 119 + 1 -AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUU -......((((.((((((((......((((.......))))..))))).(((((((.....(((((...)))))..........(((((.....)))))..)))))))..)))...)))) ( -33.40) >DroEre_CAF1 37643 120 + 1 AAAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUGGGCACAGGCAGCGGCACCCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUCCUGGCGGGCAGCUU .......(((((((.(((((((....((((.......))))))))).((((.(((((((.............))).........(((((.....)))))..)))))))))).))).)))) ( -37.92) >DroYak_CAF1 38668 120 + 1 AAAUCACAAGCGCUGGUGCUAGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACGAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUUCUGGCGGGCAGCUU .......(((((((.(((((((....((((.......))))))))))).)))..((....))..........(((.........(((((.....)))))..(((.....))).))))))) ( -32.30) >consensus _AAUCACGAGCGCUGGUGCCCGAAAUGGAAGUUAAAGUUCCUUGGCACAGGCAGCGGAAACCAAAUCAAAUUUGCACGAAAAACCAAAGGUAAACUUUGAACGCUGCUGGCGGACAGCUU .......((((.((((((((......((((.......))))..))))).(((((((....)....((((((((((.(...........)))))).)))))..))))))..)))...)))) (-29.98 = -29.90 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:19 2006