Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,894,968 – 5,895,058 |
Length | 90 |
Max. P | 0.998106 |
Location | 5,894,968 – 5,895,058 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 95.89 |
Mean single sequence MFE | -28.64 |
Consensus MFE | -26.22 |
Energy contribution | -26.06 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -2.10 |
Structure conservation index | 0.92 |
SVM decision value | 3.01 |
SVM RNA-class probability | 0.998106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5894968 90 + 20766785 UGGGAAUGGGAUAGCCGAGAGUCCGCACGGCUAUUUCAAUUGCUGUCUGUAGUUGAUAUAAUCAACAUUAUGCGGACGUAUUUAUGCAGC ......((..(((((((.(......).)))))))..))...((((((((((((((((...))))))....)))))))(((....)))))) ( -28.60) >DroSec_CAF1 31340 90 + 1 UGGGAAUGGGAUAGCCGAGAGUCCGCACGGCUAUUUCAAUUGCUGCCUGUAGUUGAUAUAAUCAACAUUAUGCGGACGUAUUUAUGCAGC ......((..(((((((.(......).)))))))..))...(((((.....((((((...))))))...((((....))))....))))) ( -27.70) >DroSim_CAF1 30106 90 + 1 UGGGAAUGGGAUAGCCGAGAGUCCGCACGGCUAUUUCAAUUGCUGCCUGUAGUUGAUAUAAUCAACAUUAUGCGGACGUAUUUAUGCAGC ......((..(((((((.(......).)))))))..))...(((((.....((((((...))))))...((((....))))....))))) ( -27.70) >DroEre_CAF1 29405 90 + 1 UGGGAAUGGGAGAGCCGAGCGUCUGCACGGCUACUUCAAUAGCUGUCUGUAGUUGAUAUAGUCAACAUUAUGCGGACGUAUUUAUGCAGC ........(((((((((.((....)).))))).))))....((((((((((((((((...))))))....)))))))(((....)))))) ( -28.70) >DroYak_CAF1 29456 90 + 1 UGGGAAUGGGAUAGCCGAGUGUCCGCACGGCUAUUUCAAUUGCUGUCUGUAGUUGAUAUAAUCGACAUUAUGCGGACGUAUUUAUGCAGC ......((..(((((((.((....)).)))))))..))...((((((((((((((((...))))))....)))))))(((....)))))) ( -30.50) >consensus UGGGAAUGGGAUAGCCGAGAGUCCGCACGGCUAUUUCAAUUGCUGUCUGUAGUUGAUAUAAUCAACAUUAUGCGGACGUAUUUAUGCAGC ......(((((((((((.(......).)))))))))))...(((((.....((((((...))))))...((((....))))....))))) (-26.22 = -26.06 + -0.16)
Location | 5,894,968 – 5,895,058 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 95.89 |
Mean single sequence MFE | -20.11 |
Consensus MFE | -17.34 |
Energy contribution | -17.58 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.28 |
Structure conservation index | 0.86 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5894968 90 - 20766785 GCUGCAUAAAUACGUCCGCAUAAUGUUGAUUAUAUCAACUACAGACAGCAAUUGAAAUAGCCGUGCGGACUCUCGGCUAUCCCAUUCCCA ((((.........((((((((...((((((...))))))........((..........)).))))))))...))))............. ( -18.60) >DroSec_CAF1 31340 90 - 1 GCUGCAUAAAUACGUCCGCAUAAUGUUGAUUAUAUCAACUACAGGCAGCAAUUGAAAUAGCCGUGCGGACUCUCGGCUAUCCCAUUCCCA ((((.........((((((((...((((((...))))))....(((.............)))))))))))...))))............. ( -22.52) >DroSim_CAF1 30106 90 - 1 GCUGCAUAAAUACGUCCGCAUAAUGUUGAUUAUAUCAACUACAGGCAGCAAUUGAAAUAGCCGUGCGGACUCUCGGCUAUCCCAUUCCCA ((((.........((((((((...((((((...))))))....(((.............)))))))))))...))))............. ( -22.52) >DroEre_CAF1 29405 90 - 1 GCUGCAUAAAUACGUCCGCAUAAUGUUGACUAUAUCAACUACAGACAGCUAUUGAAGUAGCCGUGCAGACGCUCGGCUCUCCCAUUCCCA ((((........((((.((((...(((((.....)))))........(((((....))))).)))).))))..))))............. ( -19.50) >DroYak_CAF1 29456 90 - 1 GCUGCAUAAAUACGUCCGCAUAAUGUCGAUUAUAUCAACUACAGACAGCAAUUGAAAUAGCCGUGCGGACACUCGGCUAUCCCAUUCCCA ((((.........((((((((..((((................))))((..........)).))))))))...))))............. ( -17.39) >consensus GCUGCAUAAAUACGUCCGCAUAAUGUUGAUUAUAUCAACUACAGACAGCAAUUGAAAUAGCCGUGCGGACUCUCGGCUAUCCCAUUCCCA (((((........(....).....(((((.....)))))....).))))...((..(((((((.(......).)))))))..))...... (-17.34 = -17.58 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:31 2006