| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,894,543 – 5,894,663 |
| Length | 120 |
| Max. P | 0.652928 |
| Location | 5,894,543 – 5,894,663 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.58 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -20.04 |
| Energy contribution | -20.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5894543 120 + 20766785 CUAAAUCAUUUUUAGAUAAGUGAUAUAUAGGAAUCCGUAGAGAAAAGCAAAUAGAUAUUUGGCCUAAGCUCAAGCUGAGCCAAUAAAUCAAUUCCAACCAAAGUCGGCCGGCACCAAAGA ....(((((((......))))))).....(((((..((........)).....(((..(((((...(((....)))..)))))...))).))))).......(((....)))........ ( -22.80) >DroSec_CAF1 30927 120 + 1 CUAAAUCAUUUUUAGAUAAGUGAUAUAUGGGAAUCCGUAAGGAAAAGCAAAUAGAUAUUUGGCCUAAGCUCAAGCUGAGCCAAUAAAUCAAUUCCAACCAAAGUCGGCCGGCACCCAAGA ....(((((((......)))))))...((((..(((....)))...((.....(((..(((((...(((....)))..)))))...)))........((......))...)).))))... ( -30.10) >DroSim_CAF1 29681 120 + 1 CUAAAUCAUUUUUAGAUAAGUAAUAUAUGGGAAUCCGUAAGGAAAAGCAAAUAGAUAUUUGGCCUAAGCUCAAGCUGAGCCAAUAAAUCAAUUCCAACCAAAGUCGGCCGGCACCCAAGA (((((.....)))))............((((..(((....)))...((.....(((..(((((...(((....)))..)))))...)))........((......))...)).))))... ( -27.50) >DroEre_CAF1 28984 120 + 1 CUAAAUCAUUUUCAGAUAAGUGAUAUAUACGAAUCCGUAAGAAAAAGCAAAUAGAUAUUUGGCCUGAGCUCAAGCUGAGCCAAUAAAUCAAUUCCAACCAAAGUCGGCCGGCACCCAAGA ....(((((((......)))))))...((((....)))).......((.....(((..(((((.(.(((....))).))))))...)))........((......))...))........ ( -21.90) >DroYak_CAF1 29032 120 + 1 CUAAAUCAUUUUAAGAUAAGUGAUAUAUAGGAAUCCGUAAAGAAAAACAAAUAGAUAUUUGGCCUGAGCUCAAGCUGAGCCGAUAAAUCAAUUCCAACCAAAGUCGGCCGGCACCCAAGA ....(((((((......))))))).....((................(((((....)))))(((..(((....)))(.((((((..................))))))))))..)).... ( -23.07) >consensus CUAAAUCAUUUUUAGAUAAGUGAUAUAUAGGAAUCCGUAAGGAAAAGCAAAUAGAUAUUUGGCCUAAGCUCAAGCUGAGCCAAUAAAUCAAUUCCAACCAAAGUCGGCCGGCACCCAAGA ....(((((((......))))))).....(((((..((........)).....(((..(((((...(((....)))..)))))...))).))))).......(((....)))........ (-20.04 = -20.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:29 2006