Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,893,736 – 5,893,826 |
Length | 90 |
Max. P | 0.974084 |
Location | 5,893,736 – 5,893,826 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 90.44 |
Mean single sequence MFE | -30.62 |
Consensus MFE | -24.74 |
Energy contribution | -26.38 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.10 |
Mean z-score | -2.20 |
Structure conservation index | 0.81 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5893736 90 - 20766785 AUUGUGGGUCACACUGUUAGUCGG-UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCCGGCUAACAGAGAUGUUACUCCAU ...((((((.((((((((((((((-....).(((((..(((((((.......)))))))...)))))))))))))))...))).)).)))) ( -34.40) >DroSec_CAF1 29989 90 - 1 AUUGUGGGUCGCACUGUUAGCCGG-UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCUGGCUAACAGAGAUGUUACUGCGU ...(..(..(((.((((((((((.-....)((((((..(((((((.......)))))))...))))))))))))))).).))...)..).. ( -35.40) >DroSim_CAF1 28750 90 - 1 AUUGUGGGUCGCACUGUUAGCCGG-UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCCGGCUAACAGAGAUGUUACUGCGU ...(..(..(((.(((((((((((-....).(((((..(((((((.......)))))))...))))))))))))))).).))...)..).. ( -35.30) >DroEre_CAF1 28051 86 - 1 AUUGUGGGUCGCACUGUUAACCGGCUUAACAGAGGAGCUUUGAGCUUUCCUCGCUCGGAAAAUCCUCC-----ACAGAGAUGUUACGCGGU .((((((......(((((((.....)))))))((((..(((((((.......)))))))...))))))-----)))).............. ( -25.20) >DroYak_CAF1 28088 86 - 1 AUUGUGGGUCGCACUGUUAGCGAG-UUUACAGAGGAGCUUUGAGCUUUCCCCGUUCGGAAAAUCCUCC----AACAGAGAUGUUACUCCGU ..((((((((((.......)))).-))))))(((((..(((((((.......)))))))...))))).----.((.(((......))).)) ( -22.80) >consensus AUUGUGGGUCGCACUGUUAGCCGG_UUAACAGAGGAGCUUUGAGCUUUCCCCGCUCGGAAAAUCCUCCGGCUAACAGAGAUGUUACUCCGU ...(((((((...((((((((((........(((((..(((((((.......)))))))...))))))))))))))).))).))))..... (-24.74 = -26.38 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:26 2006