Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,893,259 – 5,893,377 |
Length | 118 |
Max. P | 0.993793 |
Location | 5,893,259 – 5,893,377 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.88 |
Mean single sequence MFE | -20.81 |
Consensus MFE | -19.12 |
Energy contribution | -19.28 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.85 |
Structure conservation index | 0.92 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5893259 118 - 20766785 UUUAAUUAAGUCGCAUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCCGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU .........(((((...........--.(((((........)))))(......)))((((((((........))))))))...............)))...................... ( -22.10) >DroSec_CAF1 29516 118 - 1 UUUAAUUAAGUCGCAUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGACCGUGUUAUUUACCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU .........(((.............--.(((((........))))).......((.(.((((((........)))))))))..............)))...................... ( -18.40) >DroSim_CAF1 28277 118 - 1 UUUAAUUAAGUCGCAUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCCGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU .........(((((...........--.(((((........)))))(......)))((((((((........))))))))...............)))...................... ( -22.10) >DroEre_CAF1 27591 120 - 1 UUUAAUGAAGUCGUAUAAAUAAAAAAGCGCUGCCGUAAAUCGUAGCCAAACUAGGCGGCUCUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU .........(((((..((((((...((.((((((...................)))))).)).))))))...))(((.....)))..........)))...................... ( -19.41) >DroYak_CAF1 27615 118 - 1 UUUAAAAAAGUCGCUUAAAUAAAAA--CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCUGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU ........(((((((((........--.(((((........))))).....))))))))).((((((((((...(((.....)))...((.....)).))))))))))............ ( -22.04) >consensus UUUAAUUAAGUCGCAUAAAUAAAAA__CGCUGCCAUAAAUCGUAGCCAAACUAGGCGGCCGUGUUAUUUUCCACAUGGCCCACAUAAAUCAAUAAGACGAAAAUAAUAAAUCACCAAGAU .........(((................(((((........)))))........(.((((((((........)))))))))..............)))...................... (-19.12 = -19.28 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:25 2006