Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,888,257 – 5,888,365 |
Length | 108 |
Max. P | 0.517391 |
Location | 5,888,257 – 5,888,365 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -19.67 |
Energy contribution | -19.23 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.18 |
Mean z-score | -1.93 |
Structure conservation index | 0.77 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5888257 108 - 20766785 AAUAACAUAACCGUGAUUUUCAAUCACAUAAACUUCAUGACUAUUAAACAACAGAUGGAUCCUGACAUUCUAUCGAAGU-----------ACCUGGGUUGUUAAAAGCCAGGAACUAAU ............(((((.....)))))....(((((.((.........))...((((((.........)))))))))))-----------.(((((.((.....)).)))))....... ( -23.10) >DroSec_CAF1 24341 119 - 1 AGUAACAUAAUCGUGGUUUUCAAUCACAUGAACUUCAUGACUAUCAAACAGCAGAUGAAUCCCGACAUUCUAUCGAAGUUUCUGACGAACAUCUGGGUUGUUAAAAGCCAGGAACUAAU ..........((.((((((((((((.((((.....))))............((((((.....(((.......)))....(((....))))))))))))))...))))))).))...... ( -25.00) >DroSim_CAF1 22985 119 - 1 AGUAACAUAACCGUGGUUUUCAAUCACAUGAACUUCAUGACUAUCAAACAGCAGAUGAAUCCCGACAUUCUGUCGAAGUUUCUGACGAACAUCUGGGUUGUUAAAAGCCAGGAACUAAU ..........((.((((((((((((.((((.....))))............((((((.....((((.....))))....(((....))))))))))))))...)))))))))....... ( -28.40) >consensus AGUAACAUAACCGUGGUUUUCAAUCACAUGAACUUCAUGACUAUCAAACAGCAGAUGAAUCCCGACAUUCUAUCGAAGUUUCUGACGAACAUCUGGGUUGUUAAAAGCCAGGAACUAAU ............(((((.....)))))..(((((((.((.....)).......(((((((......)))).))))))))))..........(((((.((.....)).)))))....... (-19.67 = -19.23 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:22 2006