Locus 1552

Sequence ID 2R_DroMel_CAF1
Location 5,885,061 – 5,885,151
Length 90
Max. P 0.966794
window2608

overview

Window 8

Location 5,885,061 – 5,885,151
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 79.19
Mean single sequence MFE -25.34
Consensus MFE -15.90
Energy contribution -17.62
Covariance contribution 1.72
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.63
SVM decision value 1.60
SVM RNA-class probability 0.966794
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5885061 90 + 20766785
UGCUCGGUAUCUUCUUAGGAUACCUGAGCACAUUUGUGAGUGAGUUCGGAAAAGGACUCGCCCGCUCAUCCUGUCCAAUAUAUACGUUCA
((((((((((((.....))))))).))))).....(((.((((((((......)))))))).)))......................... ( -31.00)
>DroSec_CAF1 21115 76 + 1
UGCUCGGUAUC---CUAAGAAGCCUGAGCACAUUUGUGAGUGAGUUCGCGAAAGGACUCGCCGGCUCAUCCUGCCAAAA-----------
((((((((.((---....)).))).))))).......(.((((((((......)))))))))(((.......)))....----------- ( -26.70)
>DroSim_CAF1 19715 76 + 1
UGCUCGGUAUC---CUAAGAAGCCUGAGCACAUUUGUGAGUGAGUUCGCGAAAGGACUCGCCCGCACAUCCUGUCAAAU-----------
((((((((.((---....)).))).)))))....((((.((((((((......)))))))).)))).............----------- ( -26.60)
>DroEre_CAF1 20748 72 + 1
UGCUCUCUAUC---CUAAGACGGCUGAGCACAUUUCUG----AGUUCGCGGCAGGACUCGCCCGCUCAUCCUGUCAAAU-----------
...........---....(((((.(((((.......((----(((((......)))))))...)))))..)))))....----------- ( -19.80)
>DroYak_CAF1 20242 72 + 1
UGCUCUCUAUC---CUAAGAUACCUGAGCACAUUUGUG----AGUUCGCGGCAGGACUCGCCCGCUCGUCCUGGCAAAU-----------
(((((..((((---....))))...))))).((((((.----((..((.(((.((.....)).)))))..)).))))))----------- ( -22.60)
>consensus
UGCUCGGUAUC___CUAAGAAGCCUGAGCACAUUUGUGAGUGAGUUCGCGAAAGGACUCGCCCGCUCAUCCUGUCAAAU___________
((((((((.((.......)).))).))))).....(((.((((((((......)))))))).)))......................... (-15.90 = -17.62 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:21 2006