Locus 1551

Sequence ID 2R_DroMel_CAF1
Location 5,879,408 – 5,879,507
Length 99
Max. P 0.929271
window2607

overview

Window 7

Location 5,879,408 – 5,879,507
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.69
Mean single sequence MFE -35.92
Consensus MFE -26.44
Energy contribution -26.17
Covariance contribution -0.27
Combinations/Pair 1.29
Mean z-score -2.11
Structure conservation index 0.74
SVM decision value 1.20
SVM RNA-class probability 0.929271
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5879408 99 + 20766785
UGCAACAAUGCGACCGGCA---------UGGUGUUGAGUUGGCCAAAACCAAAAUGCCCCUGCAUUGUGUUGGCUGAC--------UGGCACUUAACGCU---UUCGGUUGCGAAA-UUU
........((((((((((.---------.((((((.(((..(((((......(((((....)))))...)))))..))--------)))))))....)).---..))))))))...-... ( -36.90)
>DroSec_CAF1 15475 99 + 1
UGCAACAAUGCGACCGUCA---------CGGUGUUGAGUUGGCCAAAACCAAAAUGCCCCUGCAUUGUGUUGCCUGAC--------UGGCACUUAACGCU---UUCGGUUGCGAAA-UUU
........((((((((...---------.(((((((((((((......))))(((((....)))))....((((....--------.)))))))))))))---..))))))))...-... ( -33.70)
>DroSim_CAF1 14090 99 + 1
UGCAACAAUGCGACCGGCA---------CGGUGUUGAGUUGGCCAAAACCAAAAUGCCCCUGCAUUGUGUUGCCUGAC--------UGGCACUUAACGCU---UUCGGUUGCGAAA-UUU
........(((((((((..---------.(((((((((((((......))))(((((....)))))....((((....--------.)))))))))))))---.)))))))))...-... ( -34.10)
>DroEre_CAF1 15330 99 + 1
UGCAACAAUGCGACCGGCG---------CGGUGUUGAGUUGGCCAAAACCAAAAUGCCCCUGCAUUGUGUUCGCUGAC--------UGGCACUUAACGCU---UUCGGUUGCAAAA-UUU
........(((((((((((---------.((((((.(((..((...(((...(((((....)))))..))).))..))--------)))))))...))).---..))))))))...-... ( -34.20)
>DroYak_CAF1 14829 107 + 1
UGCAACAAUGCGACCGACA---------CGGUGUUGAGUUGGCCAAAACCAAAAUGCCCCUGCAUUGUGUUGGCUGACUUUUGUGUUGGCACUUAACGCU---UUCGGCUGCGAAA-UUU
.(((....)))(.((((((---------(((....((((..(((((......(((((....)))))...)))))..))))))))))))))......(((.---.......)))...-... ( -35.50)
>DroPer_CAF1 17364 108 + 1
UGCAACAAUGCGUAGUGCGGGGGGGCGGGGGUGUUAACUUGGCCAACUGC----UGCUUCUGCCACUUCUGUGCUCGG--------UGGCAUUUCACGCCGCACUCCUUUGCGGGGUUUU
.(((....)))(.((..(((((((((((((((........(((.....))----)))))))))).))))))..))).(--------((((.......)))))(((((.....)))))... ( -41.10)
>consensus
UGCAACAAUGCGACCGGCA_________CGGUGUUGAGUUGGCCAAAACCAAAAUGCCCCUGCAUUGUGUUGGCUGAC________UGGCACUUAACGCU___UUCGGUUGCGAAA_UUU
........(((((((((............((((((((((..((((.......(((((....)))))..(((....)))........))))))))))))))....)))))))))....... (-26.44 = -26.17 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:20 2006