Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,420,180 – 1,420,332 |
Length | 152 |
Max. P | 0.891211 |
Location | 1,420,180 – 1,420,292 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.68 |
Mean single sequence MFE | -30.02 |
Consensus MFE | -25.72 |
Energy contribution | -25.84 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.04 |
Mean z-score | -1.89 |
Structure conservation index | 0.86 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1420180 112 - 20766785 UUAGCUUCCACUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUACUGGAAGCUGAUUAAGAAAUUUGAAUAUUUAUGGGCUCCCCAAGA------CCCCCUCC-- ((((((((((.((.(((((.......)))))(((((................))))))).)))))))))).....................(((.((.....))------.)))....-- ( -25.69) >DroSec_CAF1 38629 118 - 1 UUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUAGUGGAAGCUGAUUAAGAAAUUUGAAUAUUUAUGGGCUCCCCAAGAACUAGCCCCCCUCC-- (((((((((((((.(((((.......)))))(((((................)))))))))))))))))).....................(((((...........)))))......-- ( -31.59) >DroSim_CAF1 43684 120 - 1 UUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUAGUGGAAGCUGAUUAAGAAAUUUGAAUAUUUAUGGGCUCCCCAAGAACUAACCCCCCACCUC (((((((((((((.(((((.......)))))(((((................))))))))))))))))))................(((.((((...)))).)))............... ( -29.09) >DroYak_CAF1 37946 111 - 1 UUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGAAGGAAUUCUAGUUAAAUGCUGCUUAGUGGAAGCUGAUUAGGAAUUUUGAAUAUUUAUGUUCUCCGCAAGUCGGAACC--------- ((((((((((((.(((.....((((..((((((((....))))))))....)))))))))))))))))))...((......(((((....)))))((((.....)))).))--------- ( -33.70) >consensus UUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUAGUGGAAGCUGAUUAAGAAAUUUGAAUAUUUAUGGGCUCCCCAAGAACUAACCCCCCUCC__ (((((((((((((.(((((.......)))))(((((................))))))))))))))))))....................(((.....)))................... (-25.72 = -25.84 + 0.12)
Location | 1,420,212 – 1,420,332 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.25 |
Mean single sequence MFE | -35.63 |
Consensus MFE | -24.55 |
Energy contribution | -28.35 |
Covariance contribution | 3.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 0.69 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1420212 120 - 20766785 AGAGUUAGAGCGCAUCAGACUGCGGAGCAGACUAAGAUGGUUAGCUUCCACUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUACUGGAAGCUGAUUAAGAAAUU ..((((.(..((((......))))...).))))....(((((((((((((.((.(((((.......)))))(((((................))))))).)))))))))))))....... ( -31.69) >DroSec_CAF1 38667 120 - 1 AGAGUUGGAGCGCAUCAGACUGCGGAGGUGUCUAAGAUGGUUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUAGUGGAAGCUGAUUAAGAAAUU ....(((((.(((.((........)).))))))))..((((((((((((((((.(((((.......)))))(((((................)))))))))))))))))))))....... ( -34.99) >DroSim_CAF1 43724 120 - 1 AGAGUUAGAGCGCAUCAGACUGCGGAGCUGUCUAAGAUGGUUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUAGUGGAAGCUGAUUAAGAAAUU ..((.(((..((((......))))...))).))....((((((((((((((((.(((((.......)))))(((((................)))))))))))))))))))))....... ( -34.99) >DroEre_CAF1 37083 108 - 1 GGAGUUACAGCGCAGCAGACUGCGGAGCAGUCUAAGAAGGUUA------------GUCUUUGAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUCAGUGGCAGCUGAUUAGGAAUUU ...(((((.(.((((((((((((...))))))).((((.((((------------((((.......)))))))).....))))........))))).).)))))................ ( -34.60) >DroYak_CAF1 37977 120 - 1 AGAGUUAGAGCGCAUCAGACUGCAGAGCAGUCUAAGAUGGUUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGAAGGAAUUCUAGUUAAAUGCUGCUUAGUGGAAGCUGAUUAGGAAUUU ............(((((((((((...)))))))..))))(((((((((((((.(((.....((((..((((((((....))))))))....))))))))))))))))))))......... ( -41.90) >consensus AGAGUUAGAGCGCAUCAGACUGCGGAGCAGUCUAAGAUGGUUAGCUUCCAUUAGAGUCUUUCAGUCGGACUGGCAGAAAUUCUAAUUAAAUGCUGCUUAGUGGAAGCUGAUUAAGAAAUU ............(((((((((((...)))))))..))))((((((((((((((.(((((.......)))))(((((................)))))))))))))))))))......... (-24.55 = -28.35 + 3.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:18 2006