Locus 1549

Sequence ID 2R_DroMel_CAF1
Location 5,877,420 – 5,877,518
Length 98
Max. P 0.973934
window2605

overview

Window 5

Location 5,877,420 – 5,877,518
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 96.22
Mean single sequence MFE -25.26
Consensus MFE -22.52
Energy contribution -22.88
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.89
SVM decision value 1.72
SVM RNA-class probability 0.973934
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5877420 98 - 20766785
ACUUUGCUGAUAGAAUGGUUAAAUUAAAUCAGCACAGAGUUUGCAGAAUUAAAUUAUUGUGGCUGCUGCCAAAGCGGGGACAAGUGGCCAAUGGAGAA
.((.(((((((..(((......)))..))))))).))((((((......))))))....((((..((((....))(....).))..))))........ ( -25.70)
>DroSec_CAF1 13527 98 - 1
ACUUUGCUGAUAGAAUGGUUUAAUUUAAUCAGCACAGAGUUUGCAGAAUUAAAUUAUUGUGGCUGCUGCCAAAGCGGGGACAAGUGGCCAAUGGAGAA
.((.(((((((.((((......)))).))))))).))((((((......))))))....((((..((((....))(....).))..))))........ ( -27.00)
>DroSim_CAF1 11782 98 - 1
ACUUUGCUGAUAGAAUGGUUAAAUUAAAUCAGCACAGAGUUUGCAGAAUUAAAUUAUUGUGGCUGCUGCCAAAGCGGGGACAAGUGGCCAAUGGAGAA
.((.(((((((..(((......)))..))))))).))((((((......))))))....((((..((((....))(....).))..))))........ ( -25.70)
>DroEre_CAF1 13351 98 - 1
ACUUUGCUGAUAGAAUGGUUAAAUUAAAUCGGCACAGAGUUUGCAGGAUUAAAUUAUUGUGGCUGCUGCCAAAGCUGGGACAAGUGCCCAAUGGAGAA
.((.(((((((..(((......)))..))))))).))................((((((.(((.(((.((.......))...)))))))))))).... ( -23.00)
>DroYak_CAF1 12878 98 - 1
ACAUUGCUGAUAGAAUGGUUGAAUUAAAUCGGCACAGAGUUUGCAGAAUUAAAUUAUUGUGGCUGCAGCCAAAGCGGGGACAAGUGGCCAAUGGAGAA
.((((((((((..(((......)))..))))))((((((((((......)))))).))))(((..(.((....))(....)..)..)))))))..... ( -24.90)
>consensus
ACUUUGCUGAUAGAAUGGUUAAAUUAAAUCAGCACAGAGUUUGCAGAAUUAAAUUAUUGUGGCUGCUGCCAAAGCGGGGACAAGUGGCCAAUGGAGAA
.((.(((((((..(((......)))..))))))).))((((((......))))))....((((((((.((.......))...))))))))........ (-22.52 = -22.88 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:18 2006