Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,863,954 – 5,864,059 |
Length | 105 |
Max. P | 0.902555 |
Location | 5,863,954 – 5,864,059 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 73.95 |
Mean single sequence MFE | -20.05 |
Consensus MFE | -11.94 |
Energy contribution | -11.72 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.85 |
Structure conservation index | 0.60 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5863954 105 - 20766785 ACUUAUUCAUUACCGUAUCAAAUAAGUUGGCUUUUCUAGUAAAGUCAGCUCAUAACGUAUUCGUUUUGAACUAUUUAGGUCGCUCGAACACCUAAAAUUAAAGUU ((((.((((..((.((((...((.((((((((((......)))))))))).))...))))..))..))))...(((((((.(......))))))))....)))). ( -21.10) >DroSim_CAF1 16538 101 - 1 AAG--UUGAUA--GGAAUCAAAUAAGUUGGCUUUUCUGGUAAAGUCAACUUUUAACAUAUUCGUUUUGAGCUAUUUAGGCCGUAUUAACAACUAAAAUUAAAGUA ..(--((((((--.(..(((((.(((((((((((......))))))))))).............)))))(((.....)))).)))))))................ ( -21.44) >DroYak_CAF1 17854 91 - 1 --------------AUAUCUAACUAGUUGGCUUUUCACGUAAAGUCAGCUUUUUACAUAUUCGUUGCGAACUAUUUAGGCCGCUCUAACAGCUAAAAUUAAACUA --------------((((.(((..((((((((((......))))))))))..))).))))..((((((..((....))..)))...)))................ ( -17.60) >consensus A____UU_AU____GUAUCAAAUAAGUUGGCUUUUCUAGUAAAGUCAGCUUUUAACAUAUUCGUUUUGAACUAUUUAGGCCGCUCUAACAACUAAAAUUAAAGUA ........................((((((((((......)))))))))).......................(((((.............)))))......... (-11.94 = -11.72 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:17 2006