Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,850,007 – 5,850,105 |
Length | 98 |
Max. P | 0.668584 |
Location | 5,850,007 – 5,850,105 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.61 |
Mean single sequence MFE | -20.64 |
Consensus MFE | -15.64 |
Energy contribution | -15.80 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.83 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5850007 98 - 20766785 AACAAAAACAAACGCCAAACAGGCAAGGAGCAGUAGGAGUACAGAUUCCACCGAGAAAUGUGAGAUGGGAUAGACUCCAAAAAUUGCGAGUACUGUAA .......(((.(((((.....))).....(((((.(((((....((((((.(...........).))))))..)))))....)))))..))..))).. ( -22.20) >DroSec_CAF1 3375 97 - 1 AACAAAAACAAACGCCAAACAAGCAAGAAGCAGUAGGAGUACAGAUUCCACCGAGAAAUGUGAGAUGGGAUGGACUCUAAA-AGUGCGAGUACUGUAA .............((.......)).....((((((...(((((((.((((((.(...........).)).)))).)))...-.))))...)))))).. ( -19.00) >DroSim_CAF1 2977 97 - 1 AACAAAAACAAACGCCAAACAAGCAAGAAGCAGUAGGAGUACAGAUUCCACCGAGAAAUGUGAGAUGGGAUGGACUCUAAA-AGUGCGAGUACUGUAA .............((.......)).....((((((...(((((((.((((((.(...........).)).)))).)))...-.))))...)))))).. ( -19.00) >DroEre_CAF1 5994 97 - 1 AAUAAAAACAAAAGCCAAACAGGCAAGGAGCAGUAGGAGUAUAGAUUCCAUCGAGAAAUGUGAGAUGGGAUGGAUUCCGAA-AGUGCGAGGACUGUAA .......(((...(((.....))).....(((.(.(((((....((((((((...........))))))))..)))))...-).)))......))).. ( -23.40) >DroYak_CAF1 3426 97 - 1 AACAAAAACAAACGCCAAACAGGCAAGGAGCAGUAGGAAUCCAGAUUCCACCGAGAAAUGUGAGAUGGGAUGGUUUCUAAA-AGUGCGAGUACUGUAA .............(((.....))).....(((((((((((....)))))..((........(((((......)))))....-....))..)))))).. ( -19.59) >consensus AACAAAAACAAACGCCAAACAGGCAAGGAGCAGUAGGAGUACAGAUUCCACCGAGAAAUGUGAGAUGGGAUGGACUCUAAA_AGUGCGAGUACUGUAA .............(((.....))).....(((((((((((....((((((.(...........).))))))..)))))............)))))).. (-15.64 = -15.80 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:15 2006