Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,842,648 – 5,842,738 |
Length | 90 |
Max. P | 0.642330 |
Location | 5,842,648 – 5,842,738 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -42.83 |
Consensus MFE | -27.96 |
Energy contribution | -26.59 |
Covariance contribution | -1.37 |
Combinations/Pair | 1.44 |
Mean z-score | -1.38 |
Structure conservation index | 0.65 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5842648 90 - 20766785 GGGUGUGGG------UCUGGGUGGAGGAACUCUGGCCAGACUGGCGGCCAGAAGGCGUCAGUUGCAGCGAUGUUCCUCCUGCAGUUGCUCCACUGC------ .((((.(((------((((.(.((((((((..(.((..((((((((.((....))))))))))...)).).))))))))).)))..))))))))..------ ( -42.30) >DroPse_CAF1 1153 96 - 1 GGGUCUGGG------CCUGGGUGGAGGGACUCUGGCCAUGCUGGCGGCUCGAAGGAGGCAGCUGCAACGGUGCUGCUCCUGCAGCUGCUCCACCACAUCCUC ((((.((((------((.(.((((.((....))..)))).).)))(((((....)))(((((((((..((.....))..))))))))).)).))).)))).. ( -44.30) >DroSim_CAF1 139 90 - 1 GGGUGUGGG------CCUGAAUGGAGGAACUCUGGCCAGACUGGCGGCCAGAAGGCGUCAGUUGCAGCGAUGUUGCUCCUGCAGUUGCUCCAUUGC------ ((((....)------))).(((((((.((((((((((........)))))))....(.(((..(((((...)))))..)))).))).)))))))..------ ( -37.70) >DroEre_CAF1 1160 96 - 1 GGGUGUGGGCCUGGGCCUGGGUGGAGGAGCCCUGGCCAGACUGGCGGCCAGAAGGCGUCAGCUGCAGCGUUGUUGCUCCUGCAGUUGCUCCACUGC------ ......((((....)))).(((((((..(((((((((........))))))..)))..(((((((((.((....))..))))))))))))))))..------ ( -47.40) >DroWil_CAF1 1788 96 - 1 GGGCUUGGG------CUUGGGUGGUGGUGCAUUGGCCAUGCUGGCGGCACGUAGGCGACAAUUGCAACGGUGUUGCUCGUGCAGUUGCUCCACCACAAGCAC ........(------((...(((((((.(((...(((.....))).(((((..(((((((..........))))))))))))...))).))))))).))).. ( -41.00) >DroPer_CAF1 1141 96 - 1 GGGUCUGGG------CCUGGGUGGAGGGACUCUGGCCAUGCUGGCGGCUCGAAGGAGGCAGCUGCAACGGUGCUGCUCCUGCAGCUGCUCCACCACAUCCUC ((((.((((------((.(.((((.((....))..)))).).)))(((((....)))(((((((((..((.....))..))))))))).)).))).)))).. ( -44.30) >consensus GGGUGUGGG______CCUGGGUGGAGGAACUCUGGCCAGACUGGCGGCCAGAAGGCGUCAGCUGCAACGGUGUUGCUCCUGCAGUUGCUCCACCAC______ ......((((....)))).(((((((....((.((((........)))).))......((((((((.............)))))))))))))))........ (-27.96 = -26.59 + -1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:14 2006