Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,838,888 – 5,838,979 |
Length | 91 |
Max. P | 0.703390 |
Location | 5,838,888 – 5,838,979 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 82.18 |
Mean single sequence MFE | -26.49 |
Consensus MFE | -18.53 |
Energy contribution | -20.20 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.33 |
Mean z-score | -1.85 |
Structure conservation index | 0.70 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5838888 91 + 20766785 UUUGCCCAUCCCCCAUGCGGUUGGCUCUUAUUGAUUUUUAAAUCAAGCGAGCAUUUUUAAUGAGCAAUCAGCGUGCGCAUCUGGGCAGGGU ((((((((....((((((.....((((...((((((....))))))..))))........(((....)))))))).)....)))))))).. ( -29.60) >DroPse_CAF1 37260 82 + 1 UUU-CCUUUCUUCUCCUCUGCCAACUCGUAUUGGUUUUUAAAUCAAGCAGACAUUUUUAAUGAGCU--------CCAUGUCAAACCGGCGA ...-..............((((.....((.((((((....)))))))).(((((............--------..))))).....)))). ( -11.64) >DroSec_CAF1 35938 91 + 1 UUUGCCCAUCCCCCAUGCGUUUGGCUCUUAUUGAUUUUCAAAUCGAGCGAGCAUUUUUAAUGAGCAAUCAGCGUGCGCAUCUGGGCAGGGA ....(((..(((..((((((.((((((...((((((....))))))..))))........(((....))).)).))))))..)))..))). ( -30.30) >DroSim_CAF1 38351 91 + 1 UUUGCCCAUCCCUCAUGCGGCAGGCUCUUAUUGAUUUUCAAAUCGAGCGAGCAUUUUUAAUGAGCAAUCAGCGUGCGCAUCUGGGCAGGGA ....(((..(((..(((((((..((((...((((((....))))))..))))........(((....)))..)).)))))..)))..))). ( -29.70) >DroEre_CAF1 36316 91 + 1 UUUGCCCAACCCCCAUGCGGUUGGCUCUUAUUGAUUUUCAAAUCGAGCGAGCAUUUUUAAUGAGCAAUCAUCGUGCGCAUCUGGGCAGGGA ....(((..(((..((((((((.((((...(((.....)))...)))).))).......((((....))))....)))))..)))..))). ( -30.20) >DroYak_CAF1 36801 90 + 1 UUUGCCCAUCCCCCAUGCGGUUGGCUCUUAUUGAUUUUCAAAUCGAGCGAGCAUUUUUAAUGAGCAAUCAGCG-GCGUAUCUGGGCAGGGA ((((((((......((((.((((((((...(((.....)))...))))(..(((.....)))..)...)))).-))))...)))))))).. ( -27.50) >consensus UUUGCCCAUCCCCCAUGCGGUUGGCUCUUAUUGAUUUUCAAAUCGAGCGAGCAUUUUUAAUGAGCAAUCAGCGUGCGCAUCUGGGCAGGGA ....(((..(((..(((((....((((...((((((....))))))..))))........(((....))).....)))))..)))..))). (-18.53 = -20.20 + 1.67)
Location | 5,838,888 – 5,838,979 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.18 |
Mean single sequence MFE | -25.28 |
Consensus MFE | -16.42 |
Energy contribution | -16.45 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.35 |
Mean z-score | -1.76 |
Structure conservation index | 0.65 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5838888 91 - 20766785 ACCCUGCCCAGAUGCGCACGCUGAUUGCUCAUUAAAAAUGCUCGCUUGAUUUAAAAAUCAAUAAGAGCCAACCGCAUGGGGGAUGGGCAAA .(((..(((..(((((...((.....))...........((((..((((((....))))))...))))....)))))..)))..))).... ( -27.60) >DroPse_CAF1 37260 82 - 1 UCGCCGGUUUGACAUGG--------AGCUCAUUAAAAAUGUCUGCUUGAUUUAAAAACCAAUACGAGUUGGCAGAGGAGAAGAAAGG-AAA ..((((((((...((.(--------(((.(((.....)))...)))).))....)))))(((....))))))...............-... ( -14.70) >DroSec_CAF1 35938 91 - 1 UCCCUGCCCAGAUGCGCACGCUGAUUGCUCAUUAAAAAUGCUCGCUCGAUUUGAAAAUCAAUAAGAGCCAAACGCAUGGGGGAUGGGCAAA .(((..(((..(((((...((.....))...............((((...(((.....)))...))))....)))))..)))..))).... ( -26.10) >DroSim_CAF1 38351 91 - 1 UCCCUGCCCAGAUGCGCACGCUGAUUGCUCAUUAAAAAUGCUCGCUCGAUUUGAAAAUCAAUAAGAGCCUGCCGCAUGAGGGAUGGGCAAA .(((..(((..(((((...((.....))...........((..((((...(((.....)))...))))..)))))))..)))..))).... ( -27.40) >DroEre_CAF1 36316 91 - 1 UCCCUGCCCAGAUGCGCACGAUGAUUGCUCAUUAAAAAUGCUCGCUCGAUUUGAAAAUCAAUAAGAGCCAACCGCAUGGGGGUUGGGCAAA .(((.((((..(((((...(((((....)))))..........((((...(((.....)))...))))....)))))..)))).))).... ( -29.50) >DroYak_CAF1 36801 90 - 1 UCCCUGCCCAGAUACGC-CGCUGAUUGCUCAUUAAAAAUGCUCGCUCGAUUUGAAAAUCAAUAAGAGCCAACCGCAUGGGGGAUGGGCAAA ....((((((....(.(-(((.....)).........((((..((((...(((.....)))...)))).....)))))).)..)))))).. ( -26.40) >consensus UCCCUGCCCAGAUGCGCACGCUGAUUGCUCAUUAAAAAUGCUCGCUCGAUUUGAAAAUCAAUAAGAGCCAACCGCAUGGGGGAUGGGCAAA .(((..(((..(((((..........((...........))..((((...(((.....)))...))))....)))))..)))..))).... (-16.42 = -16.45 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:13 2006