Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,837,114 – 5,837,234 |
Length | 120 |
Max. P | 0.667155 |
Location | 5,837,114 – 5,837,234 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.66 |
Mean single sequence MFE | -44.95 |
Consensus MFE | -36.99 |
Energy contribution | -37.22 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.16 |
Mean z-score | -1.76 |
Structure conservation index | 0.82 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5837114 120 - 20766785 GCAGAUGAACAUGAACAUGGCCAACACCGCCGUCGGGGCUGGAUCGCGUCGAGGAUCCGGCAUUGCCGGAUUGAACCCCAUGCAAAUGCAGAGCGUUCAGACCUUGGCCGGGUAUGGAUC .........((((....(((((((..(((....)))(((((((.(((.((...((((((((...))))))))........(((....))))))))))))).)))))))))..)))).... ( -43.80) >DroPse_CAF1 35589 108 - 1 ------------AAACAUGUCCAACACCGCCGUCGGGGCUGGGUCGCGUCGCGGCUCCGGCAUCGCCGGUUUGAACCCAAUGCAAAUGCAGAGCGUUCAGACUUUGGCCGGGUAUGGAUC ------------......(((((((.(((..((((((((((.(......).))))))))))...((((((((((((.(..(((....)))..).)))))))))..)))))))).))))). ( -48.30) >DroGri_CAF1 49479 108 - 1 ------------CAGUAUGCCCAACACCGCCGUCGGAGCUGGUUCGCGUCGAGGCUCCGGCAUCGCCGGUUUGAACCCAAUGCAAAUGCAGAGCGUUCAGACAUUGGCCGGGUAUGGAUC ------------...(((((((.........(((((((((...(((...))))))))))))...(((.((((((((.(..(((....)))..).))))))))...))).))))))).... ( -45.00) >DroWil_CAF1 45372 108 - 1 CC------------AAAUGACCAAUACCGCCGUCGGAGCUGGUUCGCGACGUGGUUCCGGCAUUGCCGGUUUGAAUCCCAUGCAAAUGCAGAGUGUUCAAACAUUGGCCGGGUAUGGAUC ..------------......(((.((((...(((((((((((((...))).))))))))))...(((.(((((((..(..(((....)))..)..)))))))...)))..)))))))... ( -39.60) >DroMoj_CAF1 52507 108 - 1 ------------AAAUAUGAGCAACACCGCCGUCGGAGCUGGUUCGCGACGCGGCUCCGGCAUCGCCGGUUUGAACCCCAUGCAAAUGCAGAGCGUUCAGACAUUGGCCGGGUAUGGAUC ------------..............((((((((((((((((((...))).))))))))))...(((.((((((((.(..(((....)))..).))))))))...)))..)))..))... ( -42.80) >DroAna_CAF1 32227 120 - 1 GCAGAUGAACAUGAAUAUGGCCAAUACCGCCGUCGGGGCUGGAUCGCGACGCGGUUCCGGCAUCGCCGGCUUGAACCCGAUGCAAAUGCAGAGUGUUCAGACAUUGGCCGGGUAUGGAUC .........((((....((((((((...((((.((..((((((((((...)))).))))))..)).))))((((((.(..(((....)))..).))))))..))))))))..)))).... ( -50.20) >consensus ____________AAAUAUGACCAACACCGCCGUCGGAGCUGGUUCGCGACGCGGCUCCGGCAUCGCCGGUUUGAACCCCAUGCAAAUGCAGAGCGUUCAGACAUUGGCCGGGUAUGGAUC ....................(((...(((..((((((((((..........))))))))))...((((((((((((.(..(((....)))..).))))))))..)))))))...)))... (-36.99 = -37.22 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:11 2006