Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,824,249 – 5,824,363 |
Length | 114 |
Max. P | 0.847208 |
Location | 5,824,249 – 5,824,363 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.29 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -23.75 |
Energy contribution | -24.00 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -2.30 |
Structure conservation index | 0.83 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5824249 114 + 20766785 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGUAUCUUGGGUUCCAGCUCCUCCUGC ((((.((((((.(((((((....((((((((......))..............((((((...........))))))))))))..)))))))..))))))..))))......... ( -27.00) >DroSec_CAF1 21699 114 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGCAUCUUGGGUUCCAGCUCCUCCUGC ((((.((((((.(((((((....((((((((......))..............((((((...........))))))))))))..)))))))..))))))..))))......... ( -29.00) >DroSim_CAF1 22800 114 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGCAUCUUGGGUUCCAGCUCCUCCUGC ((((.((((((.(((((((....((((((((......))..............((((((...........))))))))))))..)))))))..))))))..))))......... ( -29.00) >DroEre_CAF1 21927 114 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGGCCCCCAGACCCCGUCAUGGGUUCCAGUUGCAUCUUGGACUCCAGCUCCUCCACC ((((..(((((.(((((((........((........))......(..(((..(((((((.........))))))))))..)..)))))))..)))))...))))......... ( -30.00) >DroYak_CAF1 21874 113 + 1 GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCUAGUUGCAUCUUGGAUUGCAGCUCCUCCUC- (((((((((((.((((((((...((((((((......))..............((((((...........)))))))))))).))))))))..))))).))))))........- ( -35.50) >DroAna_CAF1 19330 111 + 1 UCUGUUUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGCCGGUCUCCC---CGCCGCCAGCGGCUCGCGUUGCAUCUCCGUUUCCAGGUCCUCCCAC ((((.....((.((((((......((((.((......)).....(((.....))).)))).....---.((((....))))....)))))).)).......))))......... ( -20.90) >consensus GCUGCAUUCAGCUGCAACUAAUUAACCGAGAAAUACAUCAUAAAUAGUCCAACUGACGGACCCCCAUCCCCCGUCAUUGGUUCCAGUUGCAUCUUGGGUUCCAGCUCCUCCUGC ((((..(((((.(((((((....((((((........))..............((((((...........))))))..))))..))))))).)).)))...))))......... (-23.75 = -24.00 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:10 2006