Locus 1541

Sequence ID 2R_DroMel_CAF1
Location 5,820,380 – 5,820,488
Length 108
Max. P 0.679908
window2596

overview

Window 6

Location 5,820,380 – 5,820,488
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.96
Mean single sequence MFE -42.58
Consensus MFE -30.62
Energy contribution -30.77
Covariance contribution 0.14
Combinations/Pair 1.35
Mean z-score -1.93
Structure conservation index 0.72
SVM decision value 0.30
SVM RNA-class probability 0.679908
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5820380 108 + 20766785
GAGUCUGACUCUGGCAGGACAAUUGUUCGCCCAGGAGUGGAAAUACUUGCGGUGCCAGUUGGUGGAGUUGGUGUUGAAUGCGAUGGGCGGCUGCAUAGCCUGAGAAUU
........(((.(((.((((....))))(((((...(((..((((((.((..((((....))))..)).))))))...)))..))))).........))).))).... ( -36.60)
>DroPse_CAF1 18700 108 + 1
GAUUCUGACUCUGGCAGGGGAACUGCUCUCCCAGGAGGGGAAAUAUCCGAGGAGCCAGCUGGUGCAGCUGAUGCUGGAUGCGGUGGGCGGCCGCAUAGCCGGAGAAUU
........(((((((.(((....(.(((((....))))).)....)))(.((.(((.((((((.((((....)))).)).)))).)))..)).)...))))))).... ( -44.80)
>DroEre_CAF1 18044 108 + 1
GAGUCUGACUCUGGCAGGACAGCUGCUCGCCAAGGAGUGGAAACACUUGCGGUGCCAGUUGGUGCAAUUGAUGUUGGAUGCGAUGGGCAGCUGCAUAGCCGGAGAAUU
........(((((((..(.((((((((((((((.(((((....)))))...(..((....))..)........))))......)))))))))))...))))))).... ( -46.40)
>DroYak_CAF1 18076 108 + 1
GAGUCUGACUCUGGCAGGACAGCUGCUCGCCAAGGAGUGGAAACACUUGCGGUGCCAGUUGAUGCAGUUGGUGUUGGAUUCGAUGGGCGGCUGCAUAGCCGGAGAAUU
........(((((((..(.((((((((((.(...(((((....))))).(((..(((..((...))..)))..))).....).)))))))))))...))))))).... ( -47.40)
>DroAna_CAF1 15466 108 + 1
GGUUCUGACUCUGACACGGCGACUGUUCGCUUAGAAGCGGAAAGACCUGCGGCGCCAGUUGAUGCAGCUGAUGCUGGAUGCGGUGGGCAGCAGCAUAUCCGGAAAACU
((...((.(((((.(((.(((.((.((((((....)))))).)).....(((((.((((((...)))))).)))))..))).)))..))).))))...))........ ( -35.50)
>DroPer_CAF1 19213 108 + 1
GAUUCUGACUCUGGCAGGGGAACUGCUCUCCCAGGAGGGGAAAUAUCCGAGGAGCCAGCUGGUGCAGCUGAUGCUGGAUACGGUGGGCGGCCGCAUAGCCGGAGAAUU
........(((((((.(((....(.(((((....))))).)....)))(.((.(((.((((((.((((....)))).)).)))).)))..)).)...))))))).... ( -44.80)
>consensus
GAGUCUGACUCUGGCAGGACAACUGCUCGCCCAGGAGUGGAAAUACCUGCGGUGCCAGUUGGUGCAGCUGAUGCUGGAUGCGAUGGGCGGCUGCAUAGCCGGAGAAUU
........(((((((.......((((((......))))))........((((((((.((((((.((((....)))).)).)))).))).)))))...))))))).... (-30.62 = -30.77 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:09 2006