Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,817,803 – 5,817,922 |
Length | 119 |
Max. P | 1.000000 |
Location | 5,817,803 – 5,817,922 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.69 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -20.80 |
Energy contribution | -19.37 |
Covariance contribution | -1.43 |
Combinations/Pair | 1.38 |
Mean z-score | -3.97 |
Structure conservation index | 0.65 |
SVM decision value | 7.49 |
SVM RNA-class probability | 1.000000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5817803 119 - 20766785 UGAUCUAACCAAAGUAAUACACUUAGAAAGAUGUCUAGAAGAAUGCAUCUGUCUUAUCCCCUAUUUUCAGUCUGUUAUAGUCUCAAAACAGGAUGCAUUCUUUUGGACAGUUUCAUUG-A ...........((((.....)))).((((..(((((((((((((((((((..........((((...(.....)..))))..........))))))))))))))))))).))))....-. ( -32.75) >DroSim_CAF1 16406 119 - 1 UGGUCUAACCAAAGUAAAACACUAAGAAAUAUGUCUAGAAGUAUGCAUCCGUCUUACCCCUUAUUAUCAGUCUGUAUUAGUUUUAAAACAGGGUGCACUCUUUUGGACAGUUUCUUUG-A (((.....)))..........(.(((((((.((((((((((..(((((((((.(((...((...(((......)))..))...))).)).)))))))..))))))))))))))))).)-. ( -31.20) >DroEre_CAF1 15449 103 - 1 UCGCCUAACCAAG-CUAAACUCUAACAAGGAUGUCUAAUAGUAUGUAUCAUCGUUC----------------UUUGCAAGUUGCAAAACAUGAUGCACCCCAUUAGACAGUUUCUUGGUA .......((((((-..(((((((.....)))((((((((.(..((((((((.(((.----------------.((((.....)))))))))))))))..).)))))))))))))))))). ( -31.70) >consensus UGGUCUAACCAAAGUAAAACACUAAGAAAGAUGUCUAGAAGUAUGCAUCAGUCUUA_CCC_UAUU_UCAGUCUGUAAUAGUUUCAAAACAGGAUGCACUCUUUUGGACAGUUUCUUUG_A .........................((((..((((((((((..(((((((........................................)))))))..)))))))))).))))...... (-20.80 = -19.37 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:06 2006