Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,815,283 – 5,815,392 |
Length | 109 |
Max. P | 0.998787 |
Location | 5,815,283 – 5,815,392 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 91.02 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -24.00 |
Energy contribution | -25.00 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.09 |
Mean z-score | -3.19 |
Structure conservation index | 0.82 |
SVM decision value | 3.23 |
SVM RNA-class probability | 0.998787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5815283 109 - 20766785 AAUCACAGUGCUAUCAAU-GUGAUAGUGUUAUCUUCU--UUUAUAAACAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUAGGCAGCCUGUGUUAUAUUAAUAC ......((.((((((...-.(((((((...((((..(--(....))..))))...))))))).)))))).))...(((((((((..((....))..)))))))))....... ( -26.50) >DroSec_CAF1 12839 109 - 1 AAUCGCAGUGCUAUCAAU-GUGAUAGUGUUAUCUUCU--UUUAUAAAGAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUUGACAGCAUGUGUUAUAUUAAUAC ......((.((((((...-.(((((((.....(((((--(.....))))))....))))))).)))))).))...((((((((((.((....)).))))))))))....... ( -32.00) >DroSim_CAF1 13909 109 - 1 AAUCGCAGUGCUAUCAAU-GUGAUAGUGUUAUCUUCU--UUUAUAAAGAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUUGGCAGCAUGUGUUAUAUUAAUAC ......((.((((((...-.(((((((.....(((((--(.....))))))....))))))).)))))).))...((((((((((.((....)).))))))))))....... ( -32.00) >DroEre_CAF1 13015 109 - 1 AAUCGCAGUGCUAUCAAUGGUGAUAGUGUUAUCUUCU--UUUAUA-AGAGGUUUAACUAUCAAGGUUUAACUAUUUGUAGCACAUUCUCGGCAGCAUGUGCUAUAUUAACAC .......(((((((.((((((((((((.....(((((--(....)-)))))....))))))........)))))).)))))))......((((.....)))).......... ( -28.10) >DroYak_CAF1 13227 111 - 1 AAUCGCAGUGCUAUCAAU-GUGAUAGUGUUAUCUUUUCAGUUAUACAGAGGUUUAACUAUCAAGGUGAUUCUAUUUGUAGCACUUUCUUGGUAGCAUGUGUUAUAUUAUUAA ...((((.(((((((((.-..((((((...((((((..........))))))...))))))((((((...(.....)...)))))).)))))))))))))............ ( -28.10) >consensus AAUCGCAGUGCUAUCAAU_GUGAUAGUGUUAUCUUCU__UUUAUAAAGAGGUUUAACUAUCAAGGUAGCUCUAUUUGUAGCACAUUCUUGGCAGCAUGUGUUAUAUUAAUAC ......((.((((((.....(((((((...(((((............)))))...))))))).)))))).))...((((((((((.((....)).))))))))))....... (-24.00 = -25.00 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006