Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,811,343 – 5,811,457 |
Length | 114 |
Max. P | 0.744578 |
Location | 5,811,343 – 5,811,457 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.22 |
Mean single sequence MFE | -44.37 |
Consensus MFE | -34.04 |
Energy contribution | -32.82 |
Covariance contribution | -1.22 |
Combinations/Pair | 1.19 |
Mean z-score | -1.99 |
Structure conservation index | 0.77 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5811343 114 - 20766785 ACACCGCCUCCGUAACGGUGUCCGGGGCGUCUUUGGAUCCC---GCACUCAUUUCGGGAUCGCUGCGCGCCCUCCGCAGCGAGCUAAGCCCAAAAAAAUCAC---GCCGCUCAUUGGAUG ........((((...((((((...((((.......((((((---(.........)))))))((((((.......)))))).......)))).........))---)))).....)))).. ( -38.70) >DroVir_CAF1 7501 114 - 1 GCAACGCAUCCGUCGCGUUGCCCGAGGCGUCUUUUGAUCCU---GUCUUCAGUGCAGGAUCGCUGCGCGCCUUCCGCAGCGUACUAAGCCCAAAAAAAUCAC---GCCGUUCAUUGGUCU (((((((.......)))))))(((((((((..(((((((((---((.......))))))))((((((.......))))))...............)))..))---))).....))))... ( -42.40) >DroPse_CAF1 7414 117 - 1 GCACCGCCUCCGUAGCGGUGCCCGAGGCGUCUUUUGAUCCC---GCACCAAAUUCGGGAUCGCUGCGCGCCUUCCGCAGCGGGCUAAGCCCAAAAAAAUCGCUGCACUGUUCGUUGGACU (((((((.......)))))))(((((((((.(..(((((((---(.........))))))))..).)))))))..(((((((((...)))).........)))))..........))... ( -49.00) >DroGri_CAF1 8126 114 - 1 GCAGCGCAUCCGUUGCGUUGCUCGGGGCGUCUUUUGAUCCU---GCCUGCAAAUCAGGAUCGCUGCGCGCCUUCCGCAGCGAGCUAAGCCCAAAAAAAUCAC---GCCGUUCAUUGGAUU ((((((((.....))))))))...((((.......((((((---(.........)))))))((((((.......)))))).......))))...........---.(((.....)))... ( -43.10) >DroMoj_CAF1 17335 117 - 1 GCAACGCAUCCGCAGCGUUGCCCGAGGCGUCUUUUGAUCCUCCGGCCUUCAAUUGAGGAUCGCUGCGCGCCUUCCGCAGCUGGCUAAGCCCAAAAAAAUGAC---GCCGCUCGUUGGACU (((((((.......)))))))(((((((((((((((((((((.(........).)))))))((((((.......)))))).(((...)))....)))).)))---))).....))))... ( -45.00) >DroPer_CAF1 7455 117 - 1 GCUCCGCCUCCGUAGCGGUGCCCGAGGCGUCUUUUGAUCCC---GCACCAAAUUCGGGAUCGCUGCGCGCCUUCCGCAGCGGGCUAAGCCCAAAAAAAUCGCUGCACUGUUCGUUGGACU ......((..((.((((((((....((((..((((((((((---(.........)))))))((((((.......))))))((((...))))..))))..))))))))))))))..))... ( -48.00) >consensus GCACCGCAUCCGUAGCGGUGCCCGAGGCGUCUUUUGAUCCC___GCACUCAAUUCAGGAUCGCUGCGCGCCUUCCGCAGCGGGCUAAGCCCAAAAAAAUCAC___GCCGUUCAUUGGACU (((((((.......)))))))..(.(((.......((((((..............))))))((((((.......)))))).......))))...............(((.....)))... (-34.04 = -32.82 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:03 2006