Locus 1534

Sequence ID 2R_DroMel_CAF1
Location 5,803,010 – 5,803,106
Length 96
Max. P 0.712068
window2588

overview

Window 8

Location 5,803,010 – 5,803,106
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -21.47
Consensus MFE -16.55
Energy contribution -16.55
Covariance contribution 0.00
Combinations/Pair 1.24
Mean z-score -1.25
Structure conservation index 0.77
SVM decision value 0.38
SVM RNA-class probability 0.712068
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5803010 96 + 20766785
------------GUUUGAUUGACAUUUGCAAGCA--------GAAAUUUCCUUUUGAUACGA---UUGUAUAAUUCAAUUAAGUGCUGAUUGA-AUAAAGACGUCAGCGCGCCCACAUAC
------------..((((((((....(((((.((--------(((......)))))......---)))))....))))))))((((((((...-........)))))))).......... ( -21.20)
>DroSec_CAF1 503 96 + 1
------------GUUUGAUUGACAUUUGCAAGCA--------GAAAUUUUCUUUUGAUUCGA---UUGUAUAAUUCAAUUAAGUGCUGAUUGA-AUAAAGACGUCAGCGCGCCCACAUAC
------------..((((((((....(((((.((--------(((......)))))......---)))))....))))))))((((((((...-........)))))))).......... ( -21.20)
>DroSim_CAF1 839 96 + 1
------------GUUUGAUUGACAUAUGCAAGCA--------GAAAUUUCCUUUUGAUUCGA---UUGUAUAAUUCAAUUAAGUGCUGAUUGA-AUAAAGACGUCAGCGCGCCCACAUAC
------------..((((((((..(((((((.((--------(((......)))))......---)))))))..))))))))((((((((...-........)))))))).......... ( -23.50)
>DroWil_CAF1 5752 120 + 1
UAGUGCUUUUUUGUUUGAUUGACAAGUUUAAAGAAUCGUUUAUAUAUCUGUUAUAAAUUCCAUUUUUGUAUAAUUCAAUUAAGUGCUGAUUGAAAUAAAGACGUCAGCGCGCCCACAUUC
..(((.........((((((((......((((((...(((((((.......)))))))....))))))......))))))))((((((((............))))))))...))).... ( -22.40)
>DroYak_CAF1 843 96 + 1
------------GUUUGAUUGACAUUUGCAAGCA--------GAAAUUUCCUUUUGAUUCGA---UUGUAUAAUUCAAUUAAGUGCUGAUUGA-AUAAAGACGUCAGCGCGCCCACAUAC
------------..((((((((....(((((.((--------(((......)))))......---)))))....))))))))((((((((...-........)))))))).......... ( -21.20)
>DroMoj_CAF1 7742 86 + 1
------------UUUUGAUUGGCAUUGGCAAGA------------------CUUUGAUACGA---UUGUAUAAUUCGAUCAAGUGCUGAUUGA-AUUAAGACGUCAGCGCAUCCACCCAC
------------.......(((...(((.....------------------..(((((.(((---.........))))))))((((((((...-........))))))))..))).))). ( -19.30)
>consensus
____________GUUUGAUUGACAUUUGCAAGCA________GAAAUUUCCUUUUGAUUCGA___UUGUAUAAUUCAAUUAAGUGCUGAUUGA_AUAAAGACGUCAGCGCGCCCACAUAC
..............((((((((....(((((...........((((.....))))..........)))))....))))))))((((((((............)))))))).......... (-16.55 = -16.55 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:01 2006