Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,791,973 – 5,792,076 |
Length | 103 |
Max. P | 0.575267 |
Location | 5,791,973 – 5,792,076 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -24.59 |
Consensus MFE | -21.18 |
Energy contribution | -20.94 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.17 |
Mean z-score | -1.23 |
Structure conservation index | 0.86 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5791973 103 - 20766785 GCAUUUUGCUCAGUGUCUCUCUGUUUUUGAUAACUUUGCACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCCACAAAUUCCAUUGCCUUUUCGAGUUGCAACA (((....((((..((((...........))))....((((((.((((((....)))))).))))))..........................))))))).... ( -24.60) >DroSec_CAF1 83239 103 - 1 GCGUCUUGCUCUGUGUCUCUUUGUUUUUGAUAACUUUGUACGGCAGCAACAUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUUGCCUUUUCGAGGUGCAACA ((..((((....(((....(((((....((......((((((.((((((....)))))).))))))...)).)))))...)))........))))..)).... ( -24.30) >DroSim_CAF1 83618 103 - 1 GCGUCUUGCUCUGUGUCUCUUUGUUUUUGAUAACUUUGCACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUUGCCUUUUCGAGUUGCAACA (((.((((....(((....(((((....((......((((((.((((((....)))))).))))))...)).)))))...)))........)))).))).... ( -24.20) >DroEre_CAF1 85459 103 - 1 GCGUUUUGCUCGGUGUCUCUUUGUUUUUGAUAACUUUGUACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCCACAAAUUCCAUGGCCUUUUCGAGUUGCAACA ..(((..((((((.(((.....(..((((.......((((((.((((((....)))))).)))))).......))))..)...)))....))))))...))). ( -26.74) >DroYak_CAF1 83298 103 - 1 GCGUUUGGCUUCGUGUCUCUUUGUAUUUGAUAACUUUGGACAGCAGCAACGUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUAGCCUUUUCGAGUUGCAACA ......(((.....)))...((((((((((...((.(((((((((((.....))))))).((((.......))))...)))).)).....))))).))))).. ( -23.10) >consensus GCGUUUUGCUCUGUGUCUCUUUGUUUUUGAUAACUUUGCACGGCAGCAACGUGUUGCUGAUGUGCAUUUUCUACAAAUUCCAUUGCCUUUUCGAGUUGCAACA (((....((((..((((...........))))....((((((.((((((....)))))).))))))..........................))))))).... (-21.18 = -20.94 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:57 2006