Locus 1530

Sequence ID 2R_DroMel_CAF1
Location 5,789,794 – 5,789,890
Length 96
Max. P 0.663873
window2583

overview

Window 3

Location 5,789,794 – 5,789,890
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.90
Mean single sequence MFE -22.45
Consensus MFE -14.87
Energy contribution -15.93
Covariance contribution 1.06
Combinations/Pair 1.28
Mean z-score -1.48
Structure conservation index 0.66
SVM decision value 0.27
SVM RNA-class probability 0.663873
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5789794 96 + 20766785
UAAGCAAACUCGAACUGUGGCAAACUAUUUCCGUAUUGAGUUCUCUUCUUAAUGCCCUGCAUUGAGCCAUUUUGGGUAUAUUGCACGAAAGUUU--UU
...(((((((((((..(((((...........((((((((.......)))))))).(......).))))))))))))...))))((....))..--.. ( -23.50)
>DroGri_CAF1 123163 78 + 1
UGAGUAGACA-GCACUCUG--AGAAUAUUUCCGUGUGUGAUUC------AAAUGCGUUGUAAGUGAUUUGUUUGGGCAUAUUGCCUA-----------
.....(((((-((((.(.(--(((...)))).).))))...((------(..(((...)))..)))..)))))((((.....)))).----------- ( -14.30)
>DroSec_CAF1 81047 96 + 1
UA-GCAAACUCGAACUGUGGCAAACUAUUUCCGUAUUGAGUUCUCUUCUCAAUGCCCUGCAUUGGGCCAUUUUGGGCAUAUUGCACGAAAGUUU-UUU
..-((((.((((((..(((((...........((((((((.......))))))))((......)))))))))))))....))))((....))..-... ( -27.00)
>DroSim_CAF1 81419 98 + 1
UAAGCAAACUCGAACUGUGGCAAACUAUUUCCGUAUUGAGUUCUCUUCUCAAUGCCCUGCAUUGGGCCAUUUUGGGCAUAUUGCACGAAGGUUUUUUU
...((((.((((((..(((((...........((((((((.......))))))))((......)))))))))))))....))))((....))...... ( -25.90)
>DroEre_CAF1 83281 96 + 1
UAAGCAAACUCUAACUGUGGCAAACUAUUUCCGUAUUGAGUUCUCUUCUUAAUGCCCUGCAUUGGGCCAUUUUGGGCAUAUUGCAAGAACGUUU--UU
...((((..(((((..(((((...........((((((((.......))))))))((......))))))).)))))....))))..........--.. ( -22.00)
>DroYak_CAF1 81139 95 + 1
UAAGCAAACUCUAACUGUGGCAAACUAUUUCCGUAUUGAGUUCUCUUCUUAAUGCCCUGCAUUGGGCCAUUUUGGGCAUAUUGCAAGAAAGUCU---U
...((((..(((((..(((((...........((((((((.......))))))))((......))))))).)))))....))))..........---. ( -22.00)
>consensus
UAAGCAAACUCGAACUGUGGCAAACUAUUUCCGUAUUGAGUUCUCUUCUUAAUGCCCUGCAUUGGGCCAUUUUGGGCAUAUUGCACGAAAGUUU__UU
...((((.((((((..(((((...........((((((((.......))))))))((......)))))))))))))....)))).............. (-14.87 = -15.93 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:56 2006