Locus 153

Sequence ID 2R_DroMel_CAF1
Location 1,419,665 – 1,419,785
Length 120
Max. P 0.772449
window338

overview

Window 8

Location 1,419,665 – 1,419,785
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.30
Mean single sequence MFE -33.24
Consensus MFE -28.82
Energy contribution -28.50
Covariance contribution -0.32
Combinations/Pair 1.06
Mean z-score -1.37
Structure conservation index 0.87
SVM decision value 0.53
SVM RNA-class probability 0.772449
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1419665 120 - 20766785
GCCAUAUUUUGGCAACAUUUUGUGUGCGCACAUUAAUUUAUGCAAAUAGUUGGCAAAUAUUAAUGGCGGCCAGCAGCUGCUAAGGUUACUACGAGAAGGCGGUGAAGUGAGCAUUUAGUG
((((.....))))..((((..((((.(((.(((((((...(((.........)))...)))))))((.((((((....))).((....)).......))).))...))).))))..)))) ( -32.70)
>DroSec_CAF1 38113 114 - 1
GCCAUAUUUUGGCAACAUUUUGUGUGCGCACAUUAAUUUAUGCAAAUAGUUGGCAAAUAUUAAUGGCGGCCAGCAGCUGCUAAGGUUACUGCGAGAAGGCGGUGAAGUGAGCAU------
((((.....))))..(((((..(...(((.(((((((...(((.........)))...))))))))))(((.((((..((....))..)))).....))).)..))))).....------ ( -33.90)
>DroSim_CAF1 43166 114 - 1
GCCAUAUUUUGGCAACAUUUUGUGUGCGCACAUUAAUUUAUGCAAAUAGUUGGCAAAUAUUAAUGGCGGCCAGCAGCUGCUAAGGUUACUGCGAGAAGGCGGUGAAGUGAGCAU------
((((.....))))..(((((..(...(((.(((((((...(((.........)))...))))))))))(((.((((..((....))..)))).....))).)..))))).....------ ( -33.90)
>DroEre_CAF1 36595 120 - 1
GCCGCAUUUUGGCAACAUUUUGUGUGCGCACAUUAAUUUAUGCAAAUAGUUGGCAAAUAUUAAUGGCGGCCAGCAGCUGCUAAGGUUACUACGGCAAGGCGGCAGAGUGAGCAUUUAGUG
(((((((..((....))....))))).)).((((((...((((.....((((((...((....))...)))))).((((((...(((.....)))..)))))).......)))))))))) ( -36.00)
>DroYak_CAF1 37409 120 - 1
GCCAUAUUUUGGAAACAUUUUGUGUGCGCACAUUAAUUUAUGCAAAUAGUUGGCAAAUAUUAAUGGCGGCCAGCAGCUGCUAAGGUUACUACGAGAAGUCGGUAAAGUGAGCAUUUAGUG
(((((((..((....))....))))).)).((((((............((((((...((....))...))))))...((((....(((((((.....)).)))))....)))).)))))) ( -29.70)
>consensus
GCCAUAUUUUGGCAACAUUUUGUGUGCGCACAUUAAUUUAUGCAAAUAGUUGGCAAAUAUUAAUGGCGGCCAGCAGCUGCUAAGGUUACUACGAGAAGGCGGUGAAGUGAGCAUUUAGUG
(((((((..((....))....))))).)).(((((((...(((.........)))...)))))))(((((.....)))))...(.(((((.((......))....))))).)........ (-28.82 = -28.50 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:14 2006