Locus 1529

Sequence ID 2R_DroMel_CAF1
Location 5,786,317 – 5,786,417
Length 100
Max. P 0.988271
window2582

overview

Window 2

Location 5,786,317 – 5,786,417
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 94.20
Mean single sequence MFE -20.80
Consensus MFE -19.44
Energy contribution -19.88
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.64
Structure conservation index 0.93
SVM decision value 2.11
SVM RNA-class probability 0.988271
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5786317 100 + 20766785
GAAUUUUUAACAAUGCAAUUAACGUGAUUUUGUUAUUUCGCUAAGAAAUGACUUCAGAAUUUCGUUUUGCAUGCGGUUCGGUUAUAUAAUUCGUUUCGUU
............((((((..((((.((((((((((((((.....))))))))...)))))).))))))))))((((..(((.........)))..)))). ( -23.40)
>DroSec_CAF1 77555 100 + 1
GAAUUUUUAACAAUGCAAUUAACGUGAUUUUGUUAUUUCACUAAGAAAUGACUUCAGAAUUUCGCUUUGCAUGCGUUUCGGUUAUAUAAUUCGUUUCGUU
(((((..((((.((((((....((.((((((((((((((.....))))))))...)))))).))..))))))........))))...)))))........ ( -20.30)
>DroSim_CAF1 77929 100 + 1
GAAUUUUUAACAAUGCAAUUAACGUGAUUUUGUUAUUUCGCUAAGAAAUGACUUCAGAAUUUCGCUUUGCAUGCGUUUCGGUUAUAUAAUUCGUUUCGUU
(((((..((((.((((((....((.((((((((((((((.....))))))))...)))))).))..))))))........))))...)))))........ ( -21.00)
>DroEre_CAF1 79773 99 + 1
GAAUUUUCAACAAUGCAAUUAACGUGAAUUUGUUAUUUCGCUAAGAAAUGACUUCAGAAUUUCGGUUUGCAUGCGUUUCGGUU-UCUAAUUCAAUUUGUU
(((((...(((.((((((....((.((((((((((((((.....))))))))....))))))))..))))))........)))-...)))))........ ( -19.10)
>DroYak_CAF1 77653 100 + 1
GAAUUUUUAACAAUGCAAUUAACGUGAAUUUGUUAUUUCGCUAAGAAAUGACUUUAGAAUUUUGGUUUGCAUGCGUUUCGGUUAUAUAAUUCGAUUUGUU
(((((..((((((((((...(((..((((((((((((((.....))))))))....))))))..)))....))))))...))))...)))))........ ( -20.20)
>consensus
GAAUUUUUAACAAUGCAAUUAACGUGAUUUUGUUAUUUCGCUAAGAAAUGACUUCAGAAUUUCGCUUUGCAUGCGUUUCGGUUAUAUAAUUCGUUUCGUU
(((((..((((.((((((....((.((((((((((((((.....))))))))...)))))).))..))))))........))))...)))))........ (-19.44 = -19.88 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:55 2006