Locus 1526

Sequence ID 2R_DroMel_CAF1
Location 5,781,564 – 5,781,660
Length 96
Max. P 0.979901
window2579

overview

Window 9

Location 5,781,564 – 5,781,660
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 90.25
Mean single sequence MFE -30.84
Consensus MFE -24.90
Energy contribution -25.14
Covariance contribution 0.24
Combinations/Pair 1.24
Mean z-score -2.28
Structure conservation index 0.81
SVM decision value 1.85
SVM RNA-class probability 0.979901
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5781564 96 + 20766785
AUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGUUCUACAUUUUU-UAGGGCGCCCCGGGGAGUGACGAAUCACCCUU
..((((((((((((....)))((..((((((((.....((((........))))......))))-)))))).)))))))))((((....)))).... ( -31.20)
>DroSec_CAF1 71944 96 + 1
AUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGUUCUACACUUUU-UAGGGCGCCCCAGGGAGUGACGAAUCGCCCUU
..((((((((((((....)))((..((((((((.....((((........))))......))))-)))))).)))))))))((((....)))).... ( -30.80)
>DroSim_CAF1 73032 97 + 1
AUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGCUCUACACUUUUUUGGGGCGCCCCAGGGAGUGACGAAUUACCCUU
(((((((((((((((((((........)))))))).....((((((.((.(......).)).))))))....))))))))))).............. ( -30.60)
>DroEre_CAF1 74902 96 + 1
AUUCUCUGGGGGACUUUUAUCGCAGCCGAAAAAUCGCUGACCAUAAAAGAGGUUCUACAUUUUU-AAGGGCGCCCCGGGGAGUGACGAAUCAGCCCU
(((((((((((..(((((((.(((((.((....)))))).).)))))))..(((((........-.))))).))))))))))).............. ( -31.50)
>DroYak_CAF1 72788 96 + 1
ACUCUCAGGGGGAUUUUUAUCGCAGCCGAAAAUUUGCUGACCAAAAAAGAGGUUCUACAUUUUC-UAGGGCGCCCUGGGGAGUGACGAAUCACCCUU
......(((((..(((((....((((.........))))....)))))..(((((..((((..(-((((....)))))..))))..))))).))))) ( -30.10)
>consensus
AUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGUUCUACAUUUUU_UAGGGCGCCCCGGGGAGUGACGAAUCACCCUU
(((((((((((((((((((........))))))))................((((((........)))))).))))))))))).............. (-24.90 = -25.14 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:52 2006