Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,777,498 – 5,777,592 |
Length | 94 |
Max. P | 0.999673 |
Location | 5,777,498 – 5,777,592 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -22.36 |
Energy contribution | -23.00 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -2.79 |
Structure conservation index | 0.88 |
SVM decision value | 3.87 |
SVM RNA-class probability | 0.999673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5777498 94 + 20766785 GCAAUUAUACAUAAACAUGUGUCCGAAUAAAAGGAAGGCGCUUUCUGUGUGCUG--------GCAUGCUGCUAUGUAUAAUUGAUAUAUUUUCAUUCUCAAU .((((((((((((.((((((.(((........))).(((((.......))))).--------))))).)..))))))))))))................... ( -25.60) >DroSec_CAF1 67790 94 + 1 GCAAUUAUACAUAAACAUGUGUCCGAAUAAAAGGAAGGCGCUUUGUGUGCGCUG--------GCAUGCUGCUAUGUAUAAUUGAUAUAUUUUCAUUCUCAAU .((((((((((((.((((((.(((........))).(((((.......))))).--------))))).)..))))))))))))................... ( -27.50) >DroSim_CAF1 68934 94 + 1 GCAAUUAUACAUAAACAUGUGUCCGAAUAAAAGGAAGGCGCUUUGUGUGUGCUG--------GCAUGCUGCUAUGUAUAAUUGAUAUAUUUUCAUUCUCAAU .((((((((((((.((((((.(((........))).(((((.......))))).--------))))).)..))))))))))))................... ( -25.60) >DroEre_CAF1 70879 91 + 1 GCAAUUAUACAUAAACAUGUGUCCGAAUAAAAGGAAGGCGCUUUGUGUGUG-----------CCAUGCUUCUAUGUAUAAUUGAUAUAUUUUCAUUCUCAAU .((((((((((((........(((........))).(((((.......)))-----------)).......))))))))))))................... ( -23.90) >DroYak_CAF1 68427 102 + 1 GCAAUUAUACAUAAACAUGUGUCCGAAUAAAAGGAAGGCGCUUUGUGUGUGCUGCCACGCUGCCAUGCUUCUAUGUAUAAUUGAUAUAUUUUCAUUCUCAAU .((((((((((((.....((((((........))).(((((.......)))))..)))((......))...))))))))))))................... ( -25.10) >consensus GCAAUUAUACAUAAACAUGUGUCCGAAUAAAAGGAAGGCGCUUUGUGUGUGCUG________GCAUGCUGCUAUGUAUAAUUGAUAUAUUUUCAUUCUCAAU .((((((((((((..(((((.(((........))).(((((.......))))).........)))))....))))))))))))................... (-22.36 = -23.00 + 0.64)
Location | 5,777,498 – 5,777,592 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -21.28 |
Consensus MFE | -18.04 |
Energy contribution | -18.24 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.33 |
Structure conservation index | 0.85 |
SVM decision value | 2.60 |
SVM RNA-class probability | 0.995674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5777498 94 - 20766785 AUUGAGAAUGAAAAUAUAUCAAUUAUACAUAGCAGCAUGC--------CAGCACACAGAAAGCGCCUUCCUUUUAUUCGGACACAUGUUUAUGUAUAAUUGC ...................(((((((((((((..(((((.--------..((.........))....(((........)))..)))))))))))))))))). ( -18.90) >DroSec_CAF1 67790 94 - 1 AUUGAGAAUGAAAAUAUAUCAAUUAUACAUAGCAGCAUGC--------CAGCGCACACAAAGCGCCUUCCUUUUAUUCGGACACAUGUUUAUGUAUAAUUGC ...................(((((((((((((..(((((.--------..((((.......))))..(((........)))..)))))))))))))))))). ( -24.30) >DroSim_CAF1 68934 94 - 1 AUUGAGAAUGAAAAUAUAUCAAUUAUACAUAGCAGCAUGC--------CAGCACACACAAAGCGCCUUCCUUUUAUUCGGACACAUGUUUAUGUAUAAUUGC ...................(((((((((((((..(((((.--------..((.........))....(((........)))..)))))))))))))))))). ( -18.90) >DroEre_CAF1 70879 91 - 1 AUUGAGAAUGAAAAUAUAUCAAUUAUACAUAGAAGCAUGG-----------CACACACAAAGCGCCUUCCUUUUAUUCGGACACAUGUUUAUGUAUAAUUGC ...................(((((((((((((..((((((-----------(.(.......).))).(((........)))...))))))))))))))))). ( -19.90) >DroYak_CAF1 68427 102 - 1 AUUGAGAAUGAAAAUAUAUCAAUUAUACAUAGAAGCAUGGCAGCGUGGCAGCACACACAAAGCGCCUUCCUUUUAUUCGGACACAUGUUUAUGUAUAAUUGC ...................(((((((((((((..(((((.......(((.((.........))))).(((........)))..)))))))))))))))))). ( -24.40) >consensus AUUGAGAAUGAAAAUAUAUCAAUUAUACAUAGCAGCAUGC________CAGCACACACAAAGCGCCUUCCUUUUAUUCGGACACAUGUUUAUGUAUAAUUGC ...................(((((((((((((..(((((...........((.........))....(((........)))..)))))))))))))))))). (-18.04 = -18.24 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:51 2006