Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,772,225 – 5,772,328 |
Length | 103 |
Max. P | 0.844277 |
Location | 5,772,225 – 5,772,328 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 96.12 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -28.20 |
Energy contribution | -27.96 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.32 |
Structure conservation index | 0.93 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5772225 103 + 20766785 GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAGUGGCCUUGCGGAUAGGAAAUUCAAUU ..(((((..((...(((....(((((((.(((.....)))))))))).((((.....)))).)))..((.......)).)))))))((((.....)))).... ( -30.30) >DroSec_CAF1 62562 103 + 1 GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAUUGGCCUUGAGGAUAGGAAAUUCAAUU ..(((.(((((((....))..(((((((.(((.....)))))))))).))))).....))).(((((.(((.....)))...)))))................ ( -30.80) >DroSim_CAF1 63543 103 + 1 GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAUUGGCCUUACGGAUAGGAAAUUCAAUU ..(((.(((((((....))..(((((((.(((.....)))))))))).))))).....))).............(((((((((.......)))....)))))) ( -28.90) >DroEre_CAF1 65551 103 + 1 GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCGUCCAUGCACUCAGACAAAUAAAGUGGCCUUGCGAAUAGGAAAUUCAGUU ..(((((..((...(((....(((((((.(((.....)))))))))).((((.....)))).)))..((.......)).)))))))((((.....)))).... ( -30.70) >DroYak_CAF1 62947 103 + 1 GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAGAGGCCUUGCGAAUAGGGAAUUCAAUU ..(((((((((((....))..(((((((.(((.....)))))))))).)))))......((.(((...........))))).))))((((.....)))).... ( -31.30) >consensus GAGCGGGAUGCACAGAGGUAAGUUGCAGUGGGUGCUGCCCCUGCAACAGCAUCAUCAAUGCACUCAGACAAAUAAAGUGGCCUUGCGGAUAGGAAAUUCAAUU ..((.....))...(((((..(((((((.(((.....)))))))))).((((.....))))..................)))))..((((.....)))).... (-28.20 = -27.96 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:46 2006