Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,765,308 – 5,765,428 |
Length | 120 |
Max. P | 0.755531 |
Location | 5,765,308 – 5,765,428 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.60 |
Mean single sequence MFE | -43.07 |
Consensus MFE | -22.43 |
Energy contribution | -21.80 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.31 |
Mean z-score | -2.09 |
Structure conservation index | 0.52 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5765308 120 - 20766785 UAUUUGAUCACAUCCGAGGCGUAAGCCGCUGCAGAACCAGCUCCCUUGGCUCGUAUUCUCGCUGAGUGAUUCCUGUUCAGGCUCUCCAGCGCCUUGUUUACCGCCUCGAUGAGGUCACGU ....(((((.((((.((((((((((((((((.(((.((......((..((..........))..))(((.......))))).))).)))))....))))).)))))))))).)))))... ( -43.00) >DroPse_CAF1 57830 114 - 1 UACUUGAUCACGUCCAAUG------CAGCUCCCACUCCAGCUGCCUUGGCACGCACCCGUGCUGAAUGGUUGCGGUUGAGGCUUUCCAGCGCCUUGUUGACCGCCCCAAUGAGGUCACGG ..........(((((((.(------(((((........)))))).)))).)))...(((((((...(((..(((((((((((........)))))...)))))).)))....)).))))) ( -43.40) >DroSec_CAF1 55707 120 - 1 UACUUGAUCACAUCCGAGGGGUAAGCCGCUGCAGAACUAGCUCCCUUGGCUCGUAUCCUCGCUGAGUGAUUCCUGUUCAGGCUCUCCAGCGCCUUGUUUACCGCCUCGAUGAGGUCACGU .((.(((((.((((.((((((((((((((((.(((......((.((..((..........))..)).))..(((....))).))).)))))....))))))).)))))))).))))).)) ( -43.20) >DroEre_CAF1 55392 120 - 1 UAUUUGAUCACAUCGGAGGCGUAAGCCGCUGCUGAACCAGCUCCCUUGGCUCGUAUCCUCGCUGAGUGAUUCCGGUUCAGGCUCUCCAGCGCUUUGUUUACCGCCUCGAUGAGGUCACGU ....(((((.(((((.((((((((((((((((((((((.(.((.((..((..........))..)).))..).)))))))......)))))....))))).)))))))))).)))))... ( -46.10) >DroAna_CAF1 55270 114 - 1 UACUUGAUCACAUCGGUGGGUGACCCCGCCAC------GGCUCCCUUGGCUCUAAUCUUGGCCGAAUGAUUCCGGUUCAGGCUCUCCAGUGCCUUGUUCACAGCCUCGAUGAGAUCGCGC .....((((.((((((((((....))))))..------((((...((((((........))))))........((...((((........))))...))..))))..)))).)))).... ( -39.30) >DroPer_CAF1 57199 114 - 1 UACUUGAUCACGUCCAAUG------CAGCUCCCACUCCAGCUGCCUUGGCACGCACCCGUGCUGAAUGGUUGCGGUUGAGGCUUUCCAGCGCCUUGUUGACCGCCCCAAUGAGGUCACGG ..........(((((((.(------(((((........)))))).)))).)))...(((((((...(((..(((((((((((........)))))...)))))).)))....)).))))) ( -43.40) >consensus UACUUGAUCACAUCCGAGG_GUAAGCCGCUGCAGAACCAGCUCCCUUGGCUCGUAUCCUCGCUGAAUGAUUCCGGUUCAGGCUCUCCAGCGCCUUGUUUACCGCCUCGAUGAGGUCACGU ....(((((.((((...(((....)))(((........)))......(((..........((((........))))..((((........))))........)))..)))).)))))... (-22.43 = -21.80 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:45 2006