Locus 1521

Sequence ID 2R_DroMel_CAF1
Location 5,759,059 – 5,759,158
Length 99
Max. P 0.738228
window2570

overview

Window 0

Location 5,759,059 – 5,759,158
Length 99
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 78.16
Mean single sequence MFE -24.85
Consensus MFE -14.52
Energy contribution -15.30
Covariance contribution 0.78
Combinations/Pair 1.12
Mean z-score -1.76
Structure conservation index 0.58
SVM decision value 0.44
SVM RNA-class probability 0.738228
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5759059 99 + 20766785
UACAGCGGUAAAGAACCCCAA---------ACUCAGCUGCC-CAACUCACAUCAGGCUGACCAGGAGCCAUUGCAAGAUAGCCAGGACCAUCCAGGCUAUGGUCACCAU
....(((((..((........---------.))..))))).-............((.((((((..((((...((......))..((.....)).)))).)))))))).. ( -26.80)
>DroSec_CAF1 49441 96 + 1
UAUA----CAUAGCACCUCAAA--------ACCCAGCUGCC-CAACUCACAUCAGGCUGACCAGGAGCCACUGCAAGAGGGCCAGGACCAUCCAGGCUAUGGUCACCAU
....----((((((.((((...--------...(((((...-............)))))..(((......)))...))))....((.....))..))))))........ ( -24.36)
>DroSim_CAF1 50344 95 + 1
UACA----CAUAGCACCUCAA---------ACCCAGCUGCC-CAACUCACAUCAGGCUGACCAGGAGCCACUGCAAGAGGGCCAGGACCAUCCAGGCUAUGGUCACCAU
....----((((((.((((..---------...(((((...-............)))))..(((......)))...))))....((.....))..))))))........ ( -24.36)
>DroEre_CAF1 49384 91 + 1
UACA----CAU-GCACCCCAAC------------AGCUUCC-CAACUCACAUCAGGCUGACCAGCAGCCACUGCAGCAGGGCCAGGACCAUCCAGGCUAUGGUCACCAU
....----...-..........------------.......-............((.((((((((((...)))).....((((.((.....)).)))).)))))))).. ( -23.60)
>DroYak_CAF1 49686 100 + 1
UACA----CGUAACACCCCAACUCAC----UUCCAACUUCC-CAACUCACAUCAGGCUGACCAGCAGCCACUGCAGGAGGGCCAGGACCAUCCAGGCUAUGGUCACCAU
....----..................----...........-............((.((((((((((...)))).....((((.((.....)).)))).)))))))).. ( -23.60)
>DroAna_CAF1 50113 104 + 1
-CCA----CAUUGCACCUUAAGAGAUUAAAAACAAUCUACCAGAACUCACAUUAGGGCUACGAUUAUCCACUGGAUGAGGGCCAGUAUCAUCCAGGCAAUGGUCAGGAC
-((.----((((((.((((((.(((((......)))))....(....)...)))))).............((((((((.........))))))))))))))....)).. ( -26.40)
>consensus
UACA____CAUAGCACCCCAA_________ACCCAGCUGCC_CAACUCACAUCAGGCUGACCAGGAGCCACUGCAAGAGGGCCAGGACCAUCCAGGCUAUGGUCACCAU
......................................................((.((((((...((....)).....((((.((.....)).)))).)))))))).. (-14.52 = -15.30 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:43 2006